SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS02465 FitnessBrowser__BFirm:BPHYT_RS02465 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8wm8B Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with nitrate (see paper)
30% identity, 52% coverage: 122:272/289 of query aligns to 98:251/265 of 8wm8B

query
sites
8wm8B
V
 
V
S
 
N
R
 
P
V
 
L
A
 
V
R
 
Y
G
 
N
L
 
A
L
 
V
D
 
D
P
 
P
P
 
I
L
 
F
E
 
Q
F
 
V
Y
 
L
R
 
R
P
 
T
L
 
V
P
 
P
P
 
P
L
 
L
A
 
A
Y
 
W
L
 
L
P
 
P
L
 
I
V
 
S
V
 
L
I
 
A
W
 
A
F
 
F
G
 
Q
I
 
Q
D
 
A
E
 
N
T
 
P
A
 
S
K
 
A
I
 
I
V
 
F
V
 
V
I
 
I
Y
 
F
L
 
I
A
 
T
C
 
S
F
 
I
A
 
W
P
 
P
I
 
I
A
 
L
M
 
L
A
 
N
A
 
T
R
 
T
A
 
V
G
 
G
V
 
V
R
 
Q
S
 
Q
A
 
I
T
 
P
I
 
Q
E
 
D
Q
 
Y
I
 
I
H
 
N
A
 
V
A
 
A
Y
 
K
S
 
V
L
 
L
G
 
R
G
 
L
R
 
K
F
 
G
S
 
V
Q
 
K
I
 
Y
V
 
F
R
 
F
H
 
K
V
 
I
V
 
V
L
 
F
P
 
P
A
 
A
A
 
T
L
 
V
P
 
P
E
 
Y
I
 
I
L
 
F
T
 
T
G
 
G
L
 
L
R
 
R
I
 
I
A
 
G
I
 
I
G
 
G
F
 
L
G
 
S
W
 
W
T
x
L
T
 
A
L
 
I
V
 
V
A
|
A
A
 
A
E
 
E
M
 
M
V
 
L
A
 
V
A
 
G
T
 
G
A
 
V
G
 
G
L
 
I
G
 
G
Q
 
S
M
 
F
V
 
I
-
 
W
-
 
D
-
 
A
L
 
Y
N
 
N
A
 
T
S
 
T
S
 
T
F
 
E
L
 
T
R
 
N
T
 
L
D
 
S
V
 
E
V
 
I
V
 
I
M
 
L
G
 
A
I
 
L
V
 
I
L
 
Y
I
 
V
G
 
G
L
 
L
I
 
V
A
 
G
W
 
L
L
 
L
F
 
L
D
 
D

Query Sequence

>BPHYT_RS02465 FitnessBrowser__BFirm:BPHYT_RS02465
MTASRESLGDLPLAQTGKRPRQTGRPVHGWRLPGEGPTAVLSALSVTTLAALWWLATHLH
WLPPLFLPTPEAVWTAFLDAWHGRIQGGLPLSQHLAWSALRVFGAFALAALTAVPVGILM
GVSRVARGLLDPPLEFYRPLPPLAYLPLVVIWFGIDETAKIVVIYLACFAPIAMAARAGV
RSATIEQIHAAYSLGGRFSQIVRHVVLPAALPEILTGLRIAIGFGWTTLVAAEMVAATAG
LGQMVLNASSFLRTDVVVMGIVLIGLIAWLFDLGMRVLERRLVPWKGRV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory