SitesBLAST
Comparing BPHYT_RS02845 FitnessBrowser__BFirm:BPHYT_RS02845 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q63XL8 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Burkholderia pseudomallei (strain K96243) (see paper)
95% identity, 100% coverage: 1:318/318 of query aligns to 1:318/318 of Q63XL8
3dahC 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from burkholderia pseudomallei (see paper)
93% identity, 97% coverage: 6:312/318 of query aligns to 1:300/300 of 3dahC
P0A717 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Escherichia coli (strain K12) (see 4 papers)
63% identity, 97% coverage: 7:315/318 of query aligns to 4:313/315 of P0A717
- D129 (= D132) to A: in mutant PRSA1; alters the binding of divalent cations, especially magnesium. Little alteration in the affinity for ribose 5-phosphate and 27-fold decrease of the affinity for ATP. Absence of inhibition by AMP
- D220 (= D222) mutation to E: 4-fold decrease in the affinity binding for Rib-5-P in the presence of magnesium ions. In the presence of cobalt ions, it shows a 15-fold decrease in the affinity binding for Rib-5-P.; mutation to F: With magnesium or manganese ions, the affinity binding values for ATP and Rib-5-P are comparable to those of the wild-type.
- D221 (= D223) mutation to A: The affinity binding for ATP is comparable to those of the wild-type, apart from a slight decrease in the presence of manganese ions. The affinity binding for Rib-5-P is greatly decreased in the presence of both manganese and cobalt ions but only about 2-fold in the presence of magnesium ions.
- D224 (= D226) mutation to A: With magnesium or manganese ions, the affinity binding values for ATP and Rib-5-P are comparable to those of the wild-type.; mutation to S: With magnesium or manganese ions, the affinity binding values for ATP and Rib-5-P are comparable to those of the wild-type.
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
6asvC E. Coli prpp synthetase (see paper)
63% identity, 97% coverage: 7:315/318 of query aligns to 2:311/311 of 6asvC
4s2uA Crystal structure of the phosphorybosylpyrophosphate synthetase from e. Coli
63% identity, 96% coverage: 7:311/318 of query aligns to 3:308/308 of 4s2uA
7xmvA E.Coli phosphoribosylpyrophosphate (prpp) synthetase type a(amp/adp) filament bound with adp, amp and r5p (see paper)
62% identity, 97% coverage: 7:315/318 of query aligns to 2:305/307 of 7xmvA
- binding adenosine-5'-diphosphate: F33 (= F38), D35 (= D40), E37 (= E42), R94 (= R99), R97 (= R102), H129 (= H134)
- binding adenosine monophosphate: R97 (= R102), V99 (≠ P104), R100 (= R105), E131 (≠ D136), F145 (≠ Y150), S147 (≠ T152), V173 (= V178), A177 (= A182)
- binding 5-O-phosphono-alpha-D-ribofuranose: D212 (= D222), D213 (= D223), M214 (= M224), D216 (= D226), T217 (= T227), G219 (= G229), T220 (= T230)
7xmuA E.Coli phosphoribosylpyrophosphate (prpp) synthetase type a filament bound with adp, pi and r5p (see paper)
62% identity, 97% coverage: 7:315/318 of query aligns to 2:305/307 of 7xmuA
- binding adenosine-5'-diphosphate: F33 (= F38), D35 (= D40), E37 (= E42), R94 (= R99), Q95 (= Q100), R97 (= R102), R97 (= R102), R100 (= R105), H129 (= H134), E131 (≠ D136), F145 (≠ Y150), S147 (≠ T152), V173 (= V178)
- binding 5-O-phosphono-alpha-D-ribofuranose: D168 (= D173), D212 (= D222), M214 (= M224), D216 (= D226), T217 (= T227)
6nfeB Crystal structure of ribose-phosphate pyrophosphokinase from legionella pneumophila with bound amp, adp, and ribose-5-phosphate
65% identity, 94% coverage: 7:305/318 of query aligns to 3:297/299 of 6nfeB
- binding adenosine-5'-diphosphate: F34 (= F38), D36 (= D40), E38 (= E42), R95 (= R99), Q96 (= Q100), H130 (= H134)
- binding 5-O-phosphono-alpha-D-ribofuranose: H130 (= H134), D214 (= D222), D215 (= D223), I216 (≠ M224), D218 (= D226), T219 (= T227), A220 (= A228), T222 (= T230)
6nfeA Crystal structure of ribose-phosphate pyrophosphokinase from legionella pneumophila with bound amp, adp, and ribose-5-phosphate
65% identity, 94% coverage: 7:305/318 of query aligns to 3:296/298 of 6nfeA
- binding adenosine-5'-diphosphate: F34 (= F38), D36 (= D40), E38 (= E42), R95 (= R99), Q96 (= Q100), H130 (= H134)
- binding adenosine monophosphate: R98 (= R102), V100 (≠ P104), Y146 (= Y150), R175 (= R179), A178 (= A182), K181 (= K185)
- binding 5-O-phosphono-alpha-D-ribofuranose: H130 (= H134), D213 (= D222), D214 (= D223), I215 (≠ M224), D217 (= D226), T218 (= T227), A219 (= A228), T221 (= T230)
P14193 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PPRibP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Bacillus subtilis (strain 168) (see 4 papers)
53% identity, 99% coverage: 1:316/318 of query aligns to 1:317/317 of P14193
- M1 (= M1) modified: Initiator methionine, Removed
- RQ 102:103 (= RQ 99:100) binding
- K198 (= K196) mutation to A: Strong decrease of the Vmax value compared to that of the wild-type. The affinity binding for ATP and Rib-5-P are slightly altered compared to the wild-type. The cooperativity of ADP binding is reduced.
- R200 (= R198) mutation to A: Strong decrease of the Vmax value compared to that of the wild-type enzyme. The affinity binding for ATP and Rib-5-P are slightly altered compared to the wild-type.
- R202 (≠ K200) mutation to A: 3-fold decrease in the affinity binding for ATP. Slight decrease of the Vmax value.
- N204 (= N202) mutation to A: 4.5-fold decrease in the affinity binding for ATP. Slight decrease of the Vmax value.
- E207 (= E205) mutation to A: 2.5-fold decrease in the affinity binding for ATP. Slight decrease of the Vmax value.
- DTAGT 228:232 (= DTAGT 226:230) binding
1dkuA Crystal structures of bacillus subtilis phosphoribosylpyrophosphate synthetase: molecular basis of allosteric inhibition and activation. (see paper)
51% identity, 97% coverage: 6:315/318 of query aligns to 1:295/295 of 1dkuA
1ibsA Phosphoribosyldiphosphate synthetase in complex with cadmium ions (see paper)
51% identity, 97% coverage: 6:315/318 of query aligns to 1:297/297 of 1ibsA
1ibsB Phosphoribosyldiphosphate synthetase in complex with cadmium ions (see paper)
51% identity, 97% coverage: 6:315/318 of query aligns to 3:299/299 of 1ibsB
8dbkB Human prps1 with phosphate, atp, and r5p; hexamer with resolved catalytic loops (see paper)
48% identity, 98% coverage: 6:317/318 of query aligns to 2:314/316 of 8dbkB
- binding adenosine monophosphate: R95 (= R99), Q96 (= Q100), N199 (= N202)
- binding adenosine-5'-triphosphate: F34 (= F38), N36 (≠ D40), E38 (= E42)
- binding phosphate ion: S46 (≠ N50), R48 (= R52)
- binding 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose: H129 (= H134), D170 (= D173), G172 (= G175), K193 (= K196), R195 (= R198), D219 (= D222), D220 (= D223), D223 (= D226), T224 (= T227), C225 (≠ A228), G226 (= G229), T227 (= T230)
8dbeA Human prps1 with adp; hexamer (see paper)
48% identity, 98% coverage: 6:317/318 of query aligns to 2:314/316 of 8dbeA
- binding adenosine-5'-diphosphate: F34 (= F38), N36 (≠ D40), E38 (= E42), R95 (= R99), Q96 (= Q100), K98 (≠ R102), K99 (≠ R103), D100 (≠ P104), S102 (= S106), R103 (= R108), H129 (= H134), D142 (= D147), Y145 (= Y150), S307 (= S310), V308 (= V311), S309 (≠ M312), F312 (= F315)
- binding 5-O-phosphono-alpha-D-ribofuranose: H129 (= H134), D170 (= D173), D219 (= D222), D220 (= D223), D223 (= D226), T224 (= T227), G226 (= G229), T227 (= T230)
P60891 Ribose-phosphate pyrophosphokinase 1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I; EC 2.7.6.1 from Homo sapiens (Human) (see 5 papers)
48% identity, 98% coverage: 6:317/318 of query aligns to 3:315/318 of P60891
- S16 (≠ A19) to P: found in patients with phosphoribosyl pyrophosphate synthetase I deficiency; likely pathogenic; dbSNP:rs869025594
- D52 (= D55) to H: in PRPS1 superactivity; no effect on Km; resistant to inhibition by ADP and GDP; dbSNP:rs137852542
- N114 (= N118) to S: in PRPS1 superactivity; no effect on Km; resistant to inhibition by ADP and GDP; dbSNP:rs137852540
- L129 (= L133) to I: in PRPS1 superactivity; no effect on Km; resistant to inhibition by ADP and GDP; dbSNP:rs137852543
- S132 (≠ D136) mutation to A: Reduces catalytic activity.; mutation to F: No effect on catalytic activity.
- V142 (= V146) to L: found in a patient with an intermediate phenotype between ARTS and PRPS1 superactivity; likely pathogenic; normal PRPP synthetase activity in fibroblasts; loss of activity in erythrocytes; dbSNP:rs398122855
- N144 (= N148) mutation to H: No effect on catalytic activity.
- Y146 (= Y150) mutation to F: No effect on catalytic activity.; mutation to M: Reduces catalytic activity.
- D183 (≠ K185) to H: in PRPS1 superactivity; no effect on Km; resistant to inhibition by ADP and GDP; dbSNP:rs137852541
- A190 (= A192) to V: in PRPS1 superactivity; no effect on Km; resistant to inhibition by ADP and GDP; dbSNP:rs137852544
- H193 (≠ D195) to Q: in PRPS1 superactivity; no effect on Km; resistant to inhibition by ADP and GDP; dbSNP:rs137852545
- D203 (≠ E205) to H: in a breast cancer sample; somatic mutation
- V219 (≠ M221) to G: in a breast cancer sample; somatic mutation
- H231 (≠ K233) to D: in a colorectal cancer sample; somatic mutation
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
O94413 Ribose-phosphate pyrophosphokinase 2; Phosphoribosyl pyrophosphate synthase 2; EC 2.7.6.1 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
49% identity, 98% coverage: 5:316/318 of query aligns to 4:317/321 of O94413
- S172 (= S171) modified: Phosphoserine
2hcrA Crystal structure of human phosphoribosyl pyrophosphate synthetase 1 in complex with amp(atp), cadmium and sulfate ion (see paper)
48% identity, 97% coverage: 6:315/318 of query aligns to 1:305/305 of 2hcrA
7yk1A Structural basis of human prps2 filaments (see paper)
47% identity, 98% coverage: 6:317/318 of query aligns to 2:305/306 of 7yk1A
- binding adenosine-5'-diphosphate: F34 (= F38), N36 (≠ D40), E38 (= E42), S46 (≠ N50), R48 (= R52), R95 (= R99), K99 (≠ R103), D100 (≠ P104), K101 (≠ R105), S102 (= S106), R103 (= R108), H129 (= H134), D142 (= D147), S298 (= S310), S300 (≠ M312), F303 (= F315)
- binding phosphate ion: D214 (= D226), C216 (≠ A228), T218 (= T230)
8dbgA Human prps1 with phosphate and atp; hexamer (see paper)
47% identity, 98% coverage: 6:317/318 of query aligns to 2:307/309 of 8dbgA
- binding adenosine-5'-triphosphate: F34 (= F38), N36 (≠ D40), E38 (= E42), R95 (= R99), Q96 (= Q100), K98 (≠ R102), H129 (= H134)
- binding phosphate ion: S46 (≠ N50), R48 (= R52), D216 (= D226), T217 (= T227), C218 (≠ A228), T220 (= T230)
Query Sequence
>BPHYT_RS02845 FitnessBrowser__BFirm:BPHYT_RS02845
MSSHDGLMVFTGNANPALAQEVVKILGIPLGKAMVSRFSDGEIQVEIQENVRGKDVFVLQ
STCAPANDNLMELMIMVDALKRASAGRITAAIPYFGYARQDRRPRSARVAISAKIVANML
EIAGVERIITMDLHADQIQGFFDIPVDNIYATPVLLGDLRKQNYENLLVVSPDVGGVVRA
RALAKQLNCDLAIIDKRRPKANVAEVMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKE
RGAKQVFAYATHPVLSGGAGERIAASALDALVVTDTIPLGDEARSCAKIRSLTSAGLLAE
TFSRIRRGDSVMSLFAES
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory