SitesBLAST
Comparing BPHYT_RS03805 BPHYT_RS03805 fumarylacetoacetase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
5ti1H Crystal structure of fumarylacetoacetate hydrolase from burkholderia xenovorans lb400
93% identity, 100% coverage: 3:436/436 of query aligns to 1:430/430 of 5ti1H
- active site: D139 (= D145), H146 (= H152), E212 (= E218), E214 (= E220), D246 (= D252), R250 (= R256), Q253 (= Q259), K266 (= K272), T270 (= T276), E377 (= E383)
- binding magnesium ion: D139 (= D145), E212 (= E218), E214 (= E220), D246 (= D252)
P35505 Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Mus musculus (Mouse) (see 3 papers)
58% identity, 96% coverage: 17:435/436 of query aligns to 2:416/419 of P35505
- D126 (= D145) binding
- E199 (= E218) binding
- E201 (= E220) binding ; mutation to G: Decrease in activity.
- D233 (= D252) binding ; binding
- K253 (= K272) binding
- T257 (= T276) binding
P16930 Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Homo sapiens (Human) (see 14 papers)
57% identity, 96% coverage: 17:435/436 of query aligns to 2:416/419 of P16930
- S2 (= S17) modified: N-acetylserine
- N16 (= N33) to I: in TYRSN1; loss of activity; dbSNP:rs121965073
- A35 (= A52) to T: in TYRSN1; atypical mild phenotype
- F62 (= F81) to C: in TYRSN1; loss of activity
- A134 (= A153) to D: in TYRSN1; loss of activity; dbSNP:rs121965074
- C193 (= C212) to R: in TYRSN1; loss of activity
- D233 (= D252) to V: in TYRSN1; loss of activity; dbSNP:rs80338897
- W234 (= W253) to G: in TYRSN1; loss of activity; dbSNP:rs1555441595
- Q279 (= Q298) to R: in TYRSN1; may affect splicing resulting in skipping of exon 8 alone or together with exon 9; lower activity as compared to wild type; dbSNP:rs121965078
- R341 (= R360) to W: does not cause a clinically relevant phenotype; results in lower enzyme activity; dbSNP:rs11555096
- P342 (≠ V361) to L: in TYRSN1; loss of activity; dbSNP:rs779040832
- R381 (= R400) to G: in TYRSN1; loss of activity; dbSNP:rs121965077
- F405 (= F424) to H: in TYRSN1; requires 2 nucleotide substitutions
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
1hyoB Crystal structure of fumarylacetoacetate hydrolase complexed with 4-(hydroxymethylphosphinoyl)-3-oxo-butanoic acid (see paper)
58% identity, 96% coverage: 17:435/436 of query aligns to 4:418/419 of 1hyoB
- active site: D128 (= D145), H135 (= H152), E201 (= E218), E203 (= E220), D235 (= D252), R239 (= R256), Q242 (= Q259), K255 (= K272), T259 (= T276), E366 (= E383)
- binding acetate ion: Y130 (= Y147), V139 (= V156), R144 (= R161), L151 (= L168)
- binding calcium ion: D128 (= D145), E201 (= E218), E203 (= E220), D235 (= D252)
- binding 4-[hydroxy-[methyl-phosphinoyl]]-3-oxo-butanoic acid: D128 (= D145), F129 (= F146), Y130 (= Y147), H135 (= H152), Y161 (= Y178), E201 (= E218), E203 (= E220), R239 (= R256), Q242 (= Q259), K255 (= K272), G351 (= G368), T352 (= T369)
- binding magnesium ion: D235 (= D252), W236 (= W253), K255 (= K272), G258 (≠ A275), T259 (= T276)
2hzyA Mouse fumarylacetoacetate hydrolase complexes with a transition-state mimic of the complete substrate (see paper)
58% identity, 96% coverage: 17:435/436 of query aligns to 2:416/416 of 2hzyA
- active site: D126 (= D145), H133 (= H152), E199 (= E218), E201 (= E220), D233 (= D252), R237 (= R256), Q240 (= Q259), K253 (= K272), T257 (= T276), E364 (= E383)
- binding calcium ion: G122 (≠ P141), D123 (≠ G142)
- binding manganese (ii) ion: D126 (= D145), E199 (= E218), E201 (= E220), D233 (= D252)
1qcoA Crystal structure of fumarylacetoacetate hydrolase complexed with fumarate and acetoacetate (see paper)
58% identity, 96% coverage: 17:435/436 of query aligns to 2:416/416 of 1qcoA
- active site: K253 (= K272)
- binding acetoacetic acid: D126 (= D145), F127 (= F146), Y128 (= Y147), H133 (= H152), Y159 (= Y178), E199 (= E218), E201 (= E220), K253 (= K272), G349 (= G368), T350 (= T369)
- binding calcium ion: D126 (= D145), E199 (= E218), E201 (= E220), D233 (= D252)
- binding fumaric acid: Y128 (= Y147), V137 (= V156), F141 (= F160), R142 (= R161), Q240 (= Q259), Y244 (= Y263)
Query Sequence
>BPHYT_RS03805 BPHYT_RS03805 fumarylacetoacetase
MNALSDLQATLDPSRKSWVESANDSTNDFSIQNLPFGVFSDHLNATRRVGVAIGDGIVDL
AALESAGLLSVPSSAAGNSVFVRDALNDFIALGRDAWRGVRIQLSKLLSRDNATLRDDAE
LRGRALIRQADAQLHLPVQIPGYTDFYSSKEHATNVGSMFRDPKNALLPNWSEMPIGYNG
RASSVVVSGTPVRRPNGQLKLPDQDRPVFGACRKLDIELETGFVIGAGNALGEPVACADA
EAHIFGMVLLNDWSARDIQQWEYVPLGPFNSKGFATTISPWIVTLDALEPFRVAQPAQEL
QPLAYLRHEGEHAFDITLEVRLRPQQAKEASTISRTNFKHMYWTMAQQLAHHTVSGCNTR
VGDLMGSGTISGPTEDSFGSLLEMTWNGKKPLNLQEGGTRSFIEDGDELTLAGWCQGDGY
RVGFGACVGEILPALK
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory