Comparing BPHYT_RS06110 FitnessBrowser__BFirm:BPHYT_RS06110 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
P52697 6-phosphogluconolactonase; 6-P-gluconolactonase; Pgl; EC 3.1.1.31 from Escherichia coli (strain K12) (see paper)
28% identity, 86% coverage: 33:364/385 of query aligns to 10:311/331 of P52697
1jofB Neurospora crassa 3-carboxy-cis,cis-mucoante lactonizing enzyme (see paper)
26% identity, 46% coverage: 128:305/385 of query aligns to 98:280/365 of 1jofB
Sites not aligning to the query:
>BPHYT_RS06110 FitnessBrowser__BFirm:BPHYT_RS06110
MVSIVASHAFAQDSGPAPADGVYDMLVGTYTGPKSEGLYVYRFDTKTGEATRVSAAQTVN
PSYLVVSRDRRFVYAVNEMPGDNGPATQRGGISAFRFDAASGQLTFLNKVSSDGNDPCYL
SLSPDGKYLLTANYSVAADPGGSFAVFPLQADGQVGASVLTVHHEGGGPVKGRQDNSHVH
STVFSPDGHYLFAQDLGADKLYSYRYTPDGSRGLFGPTDWRYNQEKAGSGPRHLVFGADG
KHAYLTSEMAATVSTFDYNDGKLTQVQTLPLTEPGFKGAVGAAAIHLSPDGRFLYATNRG
DANDIVIFSVDPTNGHLKKVGHQSSMGKSPREFAIDPTGNWLIVGNQNSDTVYVFKRDQQ
SGLLEANPKHFELGAPVDFKLVSPS
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory