SitesBLAST
Comparing BPHYT_RS07245 FitnessBrowser__BFirm:BPHYT_RS07245 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
1nvmB Crystal structure of a bifunctional aldolase-dehydrogenase : sequestering a reactive and volatile intermediate (see paper)
69% identity, 99% coverage: 5:314/314 of query aligns to 2:312/312 of 1nvmB
- binding nicotinamide-adenine-dinucleotide: I10 (= I13), G11 (= G14), S12 (= S15), G13 (= G16), N14 (= N17), I15 (= I18), V36 (= V39), G37 (= G40), I38 (= I41), A78 (= A81), T79 (= T82), S80 (= S83), L103 (= L104), T104 (= T105), P105 (= P106), C132 (= C133), S163 (= S164), A164 (= A165), G165 (= G166), P166 (= P167), G167 (= G168), T168 (= T169), N171 (= N172), N290 (= N292), L291 (= L293), M294 (= M296)
Q52060 Acetaldehyde dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; EC 1.2.1.10 from Pseudomonas sp. (strain CF600) (see paper)
69% identity, 99% coverage: 5:314/314 of query aligns to 2:312/312 of Q52060
- SGNI 12:15 (= SGNI 15:18) binding
- 163:171 (vs. 164:172, 100% identical) binding
- N290 (= N292) binding
4lrsB Crystal and solution structures of the bifunctional enzyme (aldolase/aldehyde dehydrogenase) from thermomonospora curvata, reveal a cofactor-binding domain motion during NAD+ and coa accommodation whithin the shared cofactor-binding site
61% identity, 96% coverage: 7:308/314 of query aligns to 2:291/294 of 4lrsB
- binding nicotinamide-adenine-dinucleotide: V8 (≠ I13), G9 (= G14), P10 (≠ S15), G11 (= G16), N12 (= N17), I13 (= I18), V33 (= V39), G34 (= G40), V35 (≠ I41), S39 (= S45), A73 (= A81), T74 (= T82), S75 (= S83), L96 (= L104), T97 (= T105), P98 (= P106), C125 (= C133), S156 (= S164), A157 (= A165), G158 (= G166), P159 (= P167), G160 (= G168), T161 (= T169), N164 (= N172), N275 (= N292), L276 (= L293), M279 (= M296)
4lrtB Crystal and solution structures of the bifunctional enzyme (aldolase/aldehyde dehydrogenase) from thermomonospora curvata, reveal a cofactor-binding domain motion during NAD+ and coa accommodation whithin the shared cofactor-binding site
61% identity, 96% coverage: 7:308/314 of query aligns to 4:293/295 of 4lrtB
- binding coenzyme a: V10 (≠ I13), G11 (= G14), P12 (≠ S15), G13 (= G16), N14 (= N17), I15 (= I18), V35 (= V39), G36 (= G40), V37 (≠ I41), S41 (= S45), A75 (= A81), T76 (= T82), S77 (= S83), A80 (= A86), L98 (= L104), T99 (= T105), P100 (= P106), C127 (= C133), G162 (= G168), T163 (= T169), N277 (= N292), L278 (= L293)
P9WQH3 Propanal dehydrogenase (CoA-propanoylating); Acetaldehyde dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; EC 1.2.1.87; EC 1.2.1.10 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
57% identity, 96% coverage: 7:308/314 of query aligns to 4:293/303 of P9WQH3
- S41 (= S45) mutation to D: 2200-fold decrease in catalytic efficiency with coenzyme A.; mutation to I: 6600-fold decrease in catalytic efficiency with coenzyme A.
Q79AF6 Acetaldehyde dehydrogenase 4; Acetaldehyde dehydrogenase [acetylating] 4; Propanal dehydrogenase (CoA-propanoylating); EC 1.2.1.10; EC 1.2.1.87 from Paraburkholderia xenovorans (strain LB400) (see 2 papers)
56% identity, 98% coverage: 7:313/314 of query aligns to 4:294/304 of Q79AF6
- C131 (= C133) active site, Acyl-thioester intermediate; mutation C->A,S: Loss of catalytic activity. Still able to bind NAD(+), however with much lower affinity.
- N170 (= N172) mutation N->A,D: Displays significant reduction in the level of allosteric activation of the aldol cleavage reaction by BphI.
- I171 (= I173) mutation I->A,F: Exhibits preferences for aldehydes similar as wild-type. Exhibits about 80% of wild-type acetaldehyde channeling efficiency. Displays significant reduction in the level of allosteric activation of the aldol cleavage reaction by BphI.
- I195 (= I197) mutation to A: 5-fold decrease in affinity for acetaldehyde. Increase in affinity for butyraldehyde and pentaldehyde, leading to a 9- and 20-fold increase in catalytic efficiency with butyraldehyde and pentaldehyde as substrate, respectively. Exhibits 84% of wild-type acetaldehyde channeling efficiency.; mutation to F: 4- to 7-fold decrease in catalytic efficiency with aldehydes three to four carbons in length. Does not significantly reduce the channeling efficiency of the enzyme complex toward acetaldehyde or propanaldehyde.; mutation to L: Does not significantly reduce the channeling efficiency of the enzyme complex toward acetaldehyde or propanaldehyde.; mutation to W: 5- to 16-fold decrease in catalytic efficiency with aldehydes two to four carbons in length. Exhibits 59% of wild-type acetaldehyde channeling efficiency.
- D208 (= D210) mutation to A: 2-fold decrease in catalytic efficiency.
Query Sequence
>BPHYT_RS07245 FitnessBrowser__BFirm:BPHYT_RS07245
MYDKQDKQAVAIIGSGNIGTDLMIKVLRDAKHLEMGAMVGIDPASDGLARAKRLGVATTA
HGIEGLVTMPNFGAIRIAFDATSAGAHHRHAAVLREHGVTVIDLTPAAIGPFVVPVVNLF
AHLDAPNLNMVTCGGQATIPIVHAVSRVAPVRYAEIVASIASRSAGPGTRANIDEFTETT
SKAIETVGGAARGKAIIVLNPAEPPLMMRDTVYCLTEEEADTDEIESSIRAMVSAVASYV
PGYRLKQAVQFDRYTAANPLALHANERRAGLKVSVFLEVEGAAHYLPSYAGNLDIMTSAA
LAAAEQIAASRVAA
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory