SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS07680 FitnessBrowser__BFirm:BPHYT_RS07680 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
33% identity, 87% coverage: 20:226/237 of query aligns to 16:215/215 of 4ymtC

query
sites
4ymtC
M
 
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S
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I
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G
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L
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M
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M
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M
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S
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P
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K
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A
R
 
S
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S
Y
 
Y
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I
Y
 
E
V
 
V
F
 
I
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R
G
 
G
T
 
T
P
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P
L
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L
Y
 
L
V
 
V
Q
 
Q
L
 
L
L
 
L
L
 
L
I
 
I
Y
 
Y
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N
G
 
G
M
 
L
Y
 
-
S
 
-
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M
E
 
Q
F
 
F
V
 
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Q
 
-
L
 
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-
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G
F
 
M
F
 
N
R
 
I
S
 
P
G
 
A
F
 
F
H
 
T
C
 
A
A
 
G
I
 
V
L
 
S
A
 
A
F
 
L
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A
L
 
I
N
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N
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S
C
 
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A
Y
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Y
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A
E
 
E
I
 
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R
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A
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G
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A
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G
 
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N
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E
A
 
A
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A
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R
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S
Y
 
L
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G
M
 
M
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H
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A
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M
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A
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M
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Y
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A
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A
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M
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L
H
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K
A
x
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T
 
S
T
 
A
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S
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V
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I
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G
V
 
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A
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D
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A
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D
D
 
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T
Y
 
Y
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G
 
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I
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A
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I
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
33% identity, 86% coverage: 20:223/237 of query aligns to 16:212/214 of 4ymwC

query
sites
4ymwC
M
 
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L
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K
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T
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I
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M
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A
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A
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R

Query Sequence

>BPHYT_RS07680 FitnessBrowser__BFirm:BPHYT_RS07680
MIDILNQFWRAFLYWDGQRMSGLAVTLWLLVASVGIGFCAAIPLAVARVSKKRWLSTPVR
LYTYVFRGTPLYVQLLLIYTGMYSLEFVRSHQLLDAFFRSGFHCAILAFALNTCAYTTEI
FAGAIRSTSHGEVEAARAYGMSWFTMYRRIVIPSALRRALPLYSNEVILMLHATTVAFTA
TVPDILKVARDANSATYQSFDAFGLAALIYLVVSFVLVALFRRAERHWLGYLAVRTH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory