SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS07860 FitnessBrowser__BFirm:BPHYT_RS07860 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2gbxD Crystal structure of biphenyl 2,3-dioxygenase from sphingomonas yanoikuyae b1 bound to biphenyl (see paper)
30% identity, 72% coverage: 5:120/162 of query aligns to 9:127/170 of 2gbxD

query
sites
2gbxD
H
 
H
Q
 
Y
T
 
D
I
 
I
C
 
E
A
 
A
V
 
H
L
 
Y
F
 
R
R
 
A
E
 
E
A
 
V
R
 
R
L
 
M
L
 
F
D
 
Q
D
 
T
R
 
G
Q
 
Q
W
 
Y
D
 
R
E
 
E
W
 
W
L
 
L
-
 
Q
A
 
G
C
 
M
Y
 
V
T
 
A
E
 
E
D
 
D
V
 
I
T
x
H
Y
 
Y
W
 
W
M
 
M
P
 
P
A
 
I
W
 
Y
D
 
E
D
 
Q
D
 
-
D
 
-
Q
 
R
L
 
L
T
 
T
D
 
R
D
 
D
H
 
R
E
 
R
S
 
P
Q
 
D
I
 
P
-
 
T
-
 
P
-
 
D
-
 
D
S
 
A
L
 
A
M
 
I
Y
 
Y
Y
 
N
P
 
D
D
 
D
R
 
F
G
 
G
G
 
E
L
 
L
E
 
K
D
 
Q
R
 
R
V
 
V
F
 
E
R
 
R
I
 
L
K
 
Y
T
 
S
E
 
G
R
 
Q
S
 
V
S
 
W
A
 
M
S
 
E
M
 
D
P
 
P
E
 
P
P
 
S
R
 
K
T
 
I
S
 
R
H
 
Y
N
 
F
V
 
V
T
 
S
N
 
N
V
 
V
E
 
E
V
 
A
L
 
F
A
 
E
E
 
A
R
 
G
E
 
N
N
 
G
E
 
E
V
 
L
D
 
D
V
 
V
R
 
L
Y
 
S
N
 
N
F
 
I
N
 
L
T
 
V
L
 
Y
S
 
R
H
 
N
R
 
R
Y
 
R
R
 
Q
T
 
T

Sites not aligning to the query:

Query Sequence

>BPHYT_RS07860 FitnessBrowser__BFirm:BPHYT_RS07860
MSFDHQTICAVLFREARLLDDRQWDEWLACYTEDVTYWMPAWDDDDQLTDDHESQISLMY
YPDRGGLEDRVFRIKTERSSASMPEPRTSHNVTNVEVLAERENEVDVRYNFNTLSHRYRT
TDQFFGTMFVTLRKVNDELLICYKRIVLKDDYIRQVLDVYHV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory