Comparing BPHYT_RS07860 FitnessBrowser__BFirm:BPHYT_RS07860 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
2gbxD Crystal structure of biphenyl 2,3-dioxygenase from sphingomonas yanoikuyae b1 bound to biphenyl (see paper)
30% identity, 72% coverage: 5:120/162 of query aligns to 9:127/170 of 2gbxD
Sites not aligning to the query:
>BPHYT_RS07860 FitnessBrowser__BFirm:BPHYT_RS07860
MSFDHQTICAVLFREARLLDDRQWDEWLACYTEDVTYWMPAWDDDDQLTDDHESQISLMY
YPDRGGLEDRVFRIKTERSSASMPEPRTSHNVTNVEVLAERENEVDVRYNFNTLSHRYRT
TDQFFGTMFVTLRKVNDELLICYKRIVLKDDYIRQVLDVYHV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory