Comparing BPHYT_RS08530 FitnessBrowser__BFirm:BPHYT_RS08530 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
2x65B Crystal structure of t. Maritima gdp-mannose pyrophosphorylase in complex with mannose-1-phosphate. (see paper)
30% identity, 69% coverage: 26:303/405 of query aligns to 2:245/334 of 2x65B
Sites not aligning to the query:
2x65A Crystal structure of t. Maritima gdp-mannose pyrophosphorylase in complex with mannose-1-phosphate. (see paper)
30% identity, 69% coverage: 26:303/405 of query aligns to 2:245/334 of 2x65A
2x60A Crystal structure of t. Maritima gdp-mannose pyrophosphorylase in complex with gtp. (see paper)
30% identity, 69% coverage: 26:303/405 of query aligns to 2:245/333 of 2x60A
2x5zA Crystal structure of t. Maritima gdp-mannose pyrophosphorylase in complex with gdp-mannose. (see paper)
30% identity, 69% coverage: 26:303/405 of query aligns to 2:245/333 of 2x5zA
Sites not aligning to the query:
>BPHYT_RS08530 FitnessBrowser__BFirm:BPHYT_RS08530
MNRIVEPGNPLASTRDVSETATRLSVQPVIFADGLGARSWPLSRERNPKRSVDRMGDASL
LESTLRTTLSRLDASFVAAHHVTPASSPRSIAAPLMVCCEDLHRQSREPLERLARSGRSV
RMVLQPIARDTAPALTIAALAARAAAVEGDDPLIVALPADHPIADHVAFGVALAEALEHA
THGALVALGVPPRRAETGFGYIRTGAALGKRGARVIERFVEKPDPELAERYAALGNYWWN
SGLFVVRASVWLAAIALCHPAIAEACAAAFERATVDGDGTLHVARDQLALCPSRSIDYAV
MERVGSDARVAGVTVPFVAGRAQACAWDSVIRVARGEECFMLAEENPSTYAPPGVTHRLA
NTGRTPREMIEVQSGGHLGEDDIVRFEDPFGRNLESAHARKRTSG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory