Comparing BPHYT_RS08560 FitnessBrowser__BFirm:BPHYT_RS08560 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
44% identity, 84% coverage: 36:256/264 of query aligns to 3:224/225 of 4zv2A
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
44% identity, 84% coverage: 36:256/264 of query aligns to 3:226/226 of 4zv1A
3vvfA Crystal structure of ttc0807 complexed with arginine (see paper)
36% identity, 87% coverage: 30:259/264 of query aligns to 10:238/241 of 3vvfA
3vveA Crystal structure of ttc0807 complexed with lysine (see paper)
36% identity, 87% coverage: 30:259/264 of query aligns to 10:238/241 of 3vveA
3vvdA Crystal structure of ttc0807 complexed with ornithine (see paper)
36% identity, 87% coverage: 30:259/264 of query aligns to 10:238/241 of 3vvdA
3vv5A Crystal structure of ttc0807 complexed with (s)-2-aminoethyl-l- cysteine (aec) (see paper)
36% identity, 87% coverage: 30:259/264 of query aligns to 6:234/237 of 3vv5A
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
36% identity, 86% coverage: 30:255/264 of query aligns to 3:228/229 of 5t0wA
2ylnA Crystal structure of the l-cystine solute receptor of neisseria gonorrhoeae in the closed conformation (see paper)
39% identity, 88% coverage: 29:260/264 of query aligns to 6:238/240 of 2ylnA
4ymxA Crystal structure of the substrate binding protein of an amino acid abc transporter (see paper)
33% identity, 83% coverage: 37:255/264 of query aligns to 1:222/224 of 4ymxA
6svfA Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
32% identity, 86% coverage: 30:256/264 of query aligns to 3:228/229 of 6svfA
5owfA Structure of a lao-binding protein mutant with glutamine (see paper)
33% identity, 84% coverage: 38:259/264 of query aligns to 2:232/235 of 5owfA
P02911 Lysine/arginine/ornithine-binding periplasmic protein; LAO-binding protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 4 papers)
33% identity, 84% coverage: 38:259/264 of query aligns to 27:257/260 of P02911
1lstA Three-dimensional structures of the periplasmic lysine-, arginine-, ornithine-binding protein with and without a ligand (see paper)
33% identity, 84% coverage: 38:259/264 of query aligns to 5:235/238 of 1lstA
1lahE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein (see paper)
33% identity, 84% coverage: 38:259/264 of query aligns to 5:235/238 of 1lahE
1lagE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein (see paper)
33% identity, 84% coverage: 38:259/264 of query aligns to 5:235/238 of 1lagE
1lafE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein (see paper)
33% identity, 84% coverage: 38:259/264 of query aligns to 5:235/238 of 1lafE
P0AEU0 Histidine-binding periplasmic protein; HBP from Escherichia coli (strain K12) (see 3 papers)
31% identity, 84% coverage: 38:259/264 of query aligns to 27:257/260 of P0AEU0
Sites not aligning to the query:
P02910 Histidine-binding periplasmic protein; HBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
31% identity, 84% coverage: 39:259/264 of query aligns to 28:257/260 of P02910
Sites not aligning to the query:
1hslA Refined 1.89 angstroms structure of the histidine-binding protein complexed with histidine and its relationship with many other active transport(slash)chemosensory receptors (see paper)
31% identity, 84% coverage: 39:259/264 of query aligns to 6:235/238 of 1hslA
8gtuA Crystal structure of putative amino acid binding periplasmic abc transporter protein from candidatus liberibacter asiaticus in complex with clidinium (see paper)
33% identity, 83% coverage: 36:255/264 of query aligns to 2:223/236 of 8gtuA
>BPHYT_RS08560 FitnessBrowser__BFirm:BPHYT_RS08560
MKIGLLKKILVAGLIGASFTAVAAHADDLLDQVKQRGTLRIGLEGTFPPFNSKAPSGELV
GYDVDIAKAVAAKLGVKPEFVTTEWSGIIAGLQANKFDVIVNQVGITDARKQALDFSPAY
TYSAAQLIQRKDDTRQFKSLDDLKGKKLGVGLGTNYMDMAKSVPGIDVKTYPGAPEYLRD
LAAGRLDAALNDRLMLAYLMKNSQLPLRTGANVGAGNPSGIPFRKGNPKFAKAIDDAMTQ
LEADGTFSKISDKWFGIDVSKPIK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory