Comparing BPHYT_RS11510 FitnessBrowser__BFirm:BPHYT_RS11510 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
35% identity, 89% coverage: 25:496/533 of query aligns to 5:474/501 of P04983
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
35% identity, 39% coverage: 25:234/533 of query aligns to 2:219/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
35% identity, 39% coverage: 25:234/533 of query aligns to 3:220/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
35% identity, 39% coverage: 25:234/533 of query aligns to 3:220/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
35% identity, 39% coverage: 25:234/533 of query aligns to 3:220/344 of 3tuiC
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
31% identity, 41% coverage: 25:241/533 of query aligns to 2:221/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
30% identity, 41% coverage: 23:241/533 of query aligns to 1:221/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 40% coverage: 27:241/533 of query aligns to 6:223/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
30% identity, 40% coverage: 27:241/533 of query aligns to 6:223/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
30% identity, 40% coverage: 27:241/533 of query aligns to 6:223/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
30% identity, 40% coverage: 27:241/533 of query aligns to 6:223/242 of 2oljA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
32% identity, 41% coverage: 25:240/533 of query aligns to 3:220/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
32% identity, 41% coverage: 25:240/533 of query aligns to 3:220/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
32% identity, 41% coverage: 25:240/533 of query aligns to 3:220/238 of 6s8gA
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
32% identity, 41% coverage: 25:240/533 of query aligns to 3:220/233 of 6b8bA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
32% identity, 41% coverage: 25:240/533 of query aligns to 3:220/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
32% identity, 41% coverage: 25:240/533 of query aligns to 3:220/234 of 4p31A
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 39% coverage: 28:234/533 of query aligns to 8:228/253 of 1g9xB
6mbnA Lptb e163q in complex with atp (see paper)
31% identity, 41% coverage: 25:240/533 of query aligns to 4:221/241 of 6mbnA
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 39% coverage: 28:234/533 of query aligns to 8:228/254 of 1g6hA
>BPHYT_RS11510 FitnessBrowser__BFirm:BPHYT_RS11510
MSDSSYSDGAAAQPADRPEQAAPRLMLQSITKQYPAVRANDDVTLIVAPGEIHAVLGENG
AGKSTLMKIIYGAVRPDAGEIRWEGQTVEIANPAAARKLGIGMVFQHFSLFETLTVGENI
ALALDEPFDLKTLSRRIREVSADYGLDIDPQRHVHSLTVGERQRVEIVRCLLQNPRLLIM
DEPTSVLTPQAVRKLFETLRRLAAEGCSILYISHKLDEIQELCDTATVMRGGRVTGHVKP
KGETHASLAQLMVGHSLPDYTRREHNPGAVLLDVKRLSVESDDPFGTSLHDVSFGVHAGE
IFGIAGVSGNGQAELLSALSGEKRGVRADAVTICGKAAGRLGAGGRRALGFGFVPEERLG
RGAVPAMTLSENALLTAHRQQMVNSGWIKAGAMRAFAKRCIDAFDVRCGGSEALAQSLSG
GNLQKYIMGREILQAPKVLVVAQPTWGVDVGAAAFIRQQLLDLSARGVAILVISEELEEL
FDICDRIAVLAGGRLSPVRGTGATNAEEIGRWMAGLFGDREGSAPSAEQPAHA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory