SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS13290 BPHYT_RS13290 cysteine ABC transporter permease to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
36% identity, 88% coverage: 14:212/225 of query aligns to 13:215/215 of 4ymtC

query
sites
4ymtC
P
 
P
L
 
L
L
 
F
Y
 
I
A
 
S
G
 
G
L
 
L
V
 
I
F
 
M
T
 
T
V
 
L
P
 
K
L
 
L
T
 
T
L
 
F
I
 
L
S
 
A
F
 
V
A
 
T
I
 
I
G
 
G
L
 
V
A
 
L
L
 
M
A
 
G
F
 
L
L
 
F
V
 
I
A
 
A
L
 
L
V
 
M
R
 
K
L
 
M
F
 
S
G
 
S
P
 
I
K
 
K
W
 
P
A
 
I
V
 
K
A
 
L
I
 
V
V
 
A
R
 
S
F
 
S
Y
 
Y
V
 
I
W
 
E
L
 
V
F
 
I
R
 
R
G
 
G
S
 
T
P
|
P
L
|
L
L
 
L
V
 
V
Q
 
Q
L
 
L
F
 
L
V
 
L
I
 
I
F
 
Y
Y
 
N
G
 
G
L
 
L
P
 
M
N
 
Q
V
 
F
G
 
G
I
 
M
V
 
N
L
 
I
D
 
P
P
 
A
L
 
F
T
 
T
A
 
A
A
 
G
I
 
V
I
 
S
G
 
A
F
 
L
S
 
A
L
 
I
N
|
N
V
 
S
G
 
S
A
 
A
Y
|
Y
N
 
V
S
 
A
E
 
E
V
 
I
I
 
I
R
 
R
G
 
A
V
 
G
I
 
I
E
 
Q
S
 
A
I
 
V
P
 
D
K
 
P
G
 
G
Q
 
Q
W
 
N
E
 
E
A
 
A
A
 
A
Y
 
R
S
 
S
M
 
L
G
 
G
M
 
M
T
 
T
R
 
H
E
 
A
Q
 
M
A
 
A
L
 
M
R
 
R
R
 
Y
A
 
V
I
 
I
L
 
I
P
 
P
Q
 
Q
A
 
A
A
 
I
R
 
K
V
 
N
A
 
I
L
 
L
P
 
P
P
 
A
L
 
L
S
 
G
N
 
N
S
x
E
F
 
F
I
 
I
A
 
V
L
x
M
V
 
L
K
|
K
D
x
E
T
 
S
S
 
A
L
 
I
A
 
V
A
 
S
V
 
V
L
 
I
T
 
G
V
 
F
P
 
A
E
 
D
V
 
L
F
 
T
Q
 
R
A
 
Q
A
 
A
Q
 
D
R
 
I
I
 
I
A
 
Q
S
 
S
V
 
V
T
 
T
Y
 
Y
-
 
R
-
 
Y
-
 
F
E
 
E
P
 
P
L
 
Y
I
 
I
L
 
I
Y
 
I
T
 
A
E
 
A
A
 
I
A
 
Y
L
 
F
V
 
V
Y
 
M
-
 
T
L
 
L
V
 
T
F
 
F
S
 
S
S
 
K
V
 
L
L
 
L
S
 
S
S
 
L
A
 
F
Q
 
E
V
 
R
R
 
R
L
 
L
E
 
R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
37% identity, 88% coverage: 14:211/225 of query aligns to 13:214/214 of 4ymwC

query
sites
4ymwC
P
 
P
L
 
L
L
 
F
Y
 
I
A
 
S
G
 
G
L
 
L
V
 
I
F
 
M
T
 
T
V
 
L
P
 
K
L
 
L
T
 
T
L
 
F
I
 
L
S
 
A
F
 
V
A
 
T
I
 
I
G
 
G
L
 
V
A
 
L
L
 
M
A
 
G
F
 
L
L
 
F
V
 
I
A
 
A
L
 
L
V
 
M
R
 
K
L
 
M
F
 
S
G
 
S
P
 
I
K
 
K
W
 
P
A
 
I
V
 
K
A
 
L
I
 
V
V
 
A
R
 
S
F
 
S
Y
 
Y
V
 
I
W
 
E
L
 
V
F
 
I
R
 
R
G
 
G
S
 
T
P
 
P
L
 
L
L
 
L
V
 
V
Q
 
Q
L
 
L
F
 
L
V
 
L
I
 
I
F
 
Y
Y
 
N
G
 
G
L
 
L
P
 
M
N
 
Q
V
 
F
G
 
G
I
 
M
V
 
N
L
 
I
D
 
P
P
 
A
L
 
F
T
 
T
A
 
A
A
 
G
I
 
V
I
 
S
G
 
A
F
 
L
S
 
A
L
 
I
N
|
N
V
 
S
G
 
S
A
 
A
Y
|
Y
N
 
V
S
 
A
E
 
E
V
 
I
I
 
I
R
 
R
G
 
A
V
 
G
I
 
I
E
 
Q
S
 
A
I
 
V
P
 
D
K
 
P
G
 
G
Q
 
Q
W
 
N
E
 
E
A
 
A
A
 
A
Y
 
R
S
 
S
M
 
L
G
 
G
M
 
M
T
 
T
R
 
H
E
 
A
Q
 
M
A
 
A
L
 
M
R
 
R
R
 
Y
A
 
V
I
 
I
L
 
I
P
 
P
Q
 
Q
A
 
A
A
 
I
R
 
K
V
 
N
A
 
I
L
 
L
P
 
P
P
 
A
L
 
L
S
 
G
N
 
N
S
x
E
F
 
F
I
 
I
A
 
V
L
 
M
V
 
L
K
 
K
D
x
E
T
 
S
S
 
A
L
 
I
A
 
V
A
 
S
V
 
V
L
 
I
T
 
G
V
 
F
P
 
A
E
 
D
V
 
L
F
 
T
Q
 
R
A
 
Q
A
 
A
Q
 
D
R
 
I
I
 
I
A
 
Q
S
 
S
V
 
V
T
 
T
Y
 
Y
-
 
R
-
 
Y
-
 
F
E
 
E
P
 
P
L
 
Y
I
 
I
L
 
I
Y
 
I
T
 
A
E
 
A
A
 
I
A
 
Y
L
 
F
V
 
V
Y
 
M
-
 
T
L
 
L
V
 
T
F
 
F
S
 
S
S
 
K
V
 
L
L
 
L
S
 
S
S
 
L
A
 
F
Q
 
E
V
 
R
R
 
R
L
 
L

Query Sequence

>BPHYT_RS13290 BPHYT_RS13290 cysteine ABC transporter permease
MPAWLHLMAQSLWPLLYAGLVFTVPLTLISFAIGLALAFLVALVRLFGPKWAVAIVRFYV
WLFRGSPLLVQLFVIFYGLPNVGIVLDPLTAAIIGFSLNVGAYNSEVIRGVIESIPKGQW
EAAYSMGMTREQALRRAILPQAARVALPPLSNSFIALVKDTSLAAVLTVPEVFQAAQRIA
SVTYEPLILYTEAALVYLVFSSVLSSAQVRLERKFGRHALFQAGN

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory