Comparing BPHYT_RS13585 FitnessBrowser__BFirm:BPHYT_RS13585 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
40% identity, 96% coverage: 3:212/218 of query aligns to 5:214/214 of 4ymwC
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
40% identity, 96% coverage: 3:212/218 of query aligns to 5:214/215 of 4ymtC
>BPHYT_RS13585 FitnessBrowser__BFirm:BPHYT_RS13585
MFFQNAVEFLPILLKGAVVTIEITFCSFVLSTVLGLLLALMRVSDNRVVSNAAATFINVI
RGLPIIVQLFYIYFVLPDLGVQLSAFQAGFIGLGIAYSVYQAENFRAGIQAIDHGQIEAA
QSIGMRGAMIMRRVVLPQAFRIALPPYGNTLVMMLKDSSLASTITVAEMTRAGQLIASST
FQNMTVFTLVALLYLGLSLPLVYGLRRLERRLGLKGKR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory