SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS13585 FitnessBrowser__BFirm:BPHYT_RS13585 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
40% identity, 96% coverage: 3:212/218 of query aligns to 5:214/214 of 4ymwC

query
sites
4ymwC
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T
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A
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I
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A
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P
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L

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
40% identity, 96% coverage: 3:212/218 of query aligns to 5:214/215 of 4ymtC

query
sites
4ymtC
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L

Query Sequence

>BPHYT_RS13585 FitnessBrowser__BFirm:BPHYT_RS13585
MFFQNAVEFLPILLKGAVVTIEITFCSFVLSTVLGLLLALMRVSDNRVVSNAAATFINVI
RGLPIIVQLFYIYFVLPDLGVQLSAFQAGFIGLGIAYSVYQAENFRAGIQAIDHGQIEAA
QSIGMRGAMIMRRVVLPQAFRIALPPYGNTLVMMLKDSSLASTITVAEMTRAGQLIASST
FQNMTVFTLVALLYLGLSLPLVYGLRRLERRLGLKGKR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory