Comparing BPHYT_RS16935 FitnessBrowser__BFirm:BPHYT_RS16935 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
4kzkA The structure of the periplasmic l-arabinose binding protein from burkholderia thailandensis
64% identity, 91% coverage: 29:329/332 of query aligns to 1:301/301 of 4kzkA
5abpA Substrate specificity and affinity of a protein modulated by bound water molecules (see paper)
49% identity, 91% coverage: 29:329/332 of query aligns to 2:302/305 of 5abpA
1abfA Substrate specificity and affinity of a protein modulated by bound water molecules (see paper)
49% identity, 91% coverage: 29:329/332 of query aligns to 2:302/305 of 1abfA
1abeA Novel stereospecificity of the l-arabinose-binding protein (see paper)
49% identity, 91% coverage: 29:329/332 of query aligns to 2:302/305 of 1abeA
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
28% identity, 67% coverage: 27:247/332 of query aligns to 1:216/287 of 5dteB
Sites not aligning to the query:
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
24% identity, 87% coverage: 31:320/332 of query aligns to 3:273/274 of 2ioyA
4rxmA Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
27% identity, 61% coverage: 65:268/332 of query aligns to 42:233/291 of 4rxmA
Sites not aligning to the query:
4rxmB Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
27% identity, 61% coverage: 65:268/332 of query aligns to 40:231/288 of 4rxmB
Sites not aligning to the query:
>BPHYT_RS16935 FitnessBrowser__BFirm:BPHYT_RS16935
MKRRIFLTLAAAATGVLFNAPVAQAADPVKIGFLVKQPEEPWFQDEWKFAEIAAKEKGFT
LVKIGAPSGEKVMSAIDNLSAQKAQGFVICTPDVKLGPGIVAKAKADGLKMMTVDDRLVD
GAGKPIASVPHMGISAYNIGKQVGDGLAAEIKKRGWDMKDVGAIDVTYEQLPTAHDRTSG
ATDALIAAGFPKANIVMAPQAKTDTENAFNAANIALTKNPQFKHWVAYALNDEGVLGAVR
AAEGRGFKADNMIGIGIGGSDSALNEFKKPSPTGFYGTVIISPKRHGEETSTLMYDWITQ
GKAPPPLTLTTGMLATRDNVADVRQKMGLAAN
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory