SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS18305 FitnessBrowser__BFirm:BPHYT_RS18305 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found no hits to proteins with known functional sites (download)

Query Sequence

>BPHYT_RS18305 FitnessBrowser__BFirm:BPHYT_RS18305
MNAPLDAGQRASLEAALSSVTLDDKYTLERGRAYMSGIQALVRLPMLQQERDRAAGLNTA
GFISGYRGSPLGGLDQSLWKAKQHLAAHQVVFQPGVNEDLAATAVWGSQQVNLYPSAKYD
GVFSMWYGKGPGVDRSSDVFKHGNSAGSARNGGVLVLAGDDHAAKSSTLAHQSEHIFKAC
GLPVLFPSNVQEYLDFGLHGWAMSRYSGLWVAMKCVTDVVESSASVDIDPHRTKIILPED
FAMPEGGLNIRWPDPPLVQEARLLDYKWYAALAYVRANKLDRVEIDSPHARFGIMTGGKA
YLDVRQALTDLGLDDETCSRIGIRLYKVGCVWPLEAQGAQAFARGLDEILVVEEKRQILE
YAIKEELYNWPDAQRPRVFGKFDEKDGAGGEWSVPMGNWLLPAHYELSPAIIAKAIATRL
DKFDLPSDVRARIATRIAVIEAKEKALARPRVEAERKPWFCSGCPHNTSTNVPEGSRAMA
GIGCHYMTVWMDRSTSTFSQMGGEGVAWIGQAPFSNDKHVFANLGDGTYFHSGLLAIRAA
IASKANITYKILYNDAVAMTGGQPVDGVLTVPQITHQLAAEGATKIVIVTDEPEKYSANV
GLAPGIDIHHRDKLDEVQRQLREVPGTTILIYDQTCATEKRRRRKRGTYPDPARRVVINE
AVCEGCGDCSVKSNCLSVEPLDTEYGTKRQINQSTCNKDFSCVNGFCPSFVSVEGGQLRK
PKAASGLAGDAMPPVPEPDLPSMERPYGVLVTGVGGTGVVTIGALLGMAAHLENKGVTVL
DVTGLAQKGGAVMSHVQIAKNPADIHATRIAMGEASLVIGCDAIVTASDECVSRMQAGRT
RVVLNSAHTPTAELIKNPNWRFPGSSTEADVRAAAGDDGVDTVDANHFAVALLGDAIYTN
PFVLGYAWQRGWVPLTYQSLMRAIELNNVQVEKNRAAFEWGRRAAHDLAGVRKLAQSQGR
GAAAETASSKIISLHTPKALDTLIDKRAEYLTAWQNSAYADRYRALVSQVRAAESALDSI
DGQLPLTEAVAKNLHKLMAYKDEYEVARLYSDPAFIEKLKANFEGDWKLHIHLAPPTFSK
KDAKGHLVKKKYGPWVFSAMHVLARLKFLRGTALDVFGKTEERRTERALIGEYEALVREL
IAGLTAQKRELAVELANLPDGIRGYGHVKENNLKGVRVKWNELLARWRSPEAGKTQHAA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory