SitesBLAST
Comparing BPHYT_RS20235 FitnessBrowser__BFirm:BPHYT_RS20235 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
P06972 Iron(3+)-hydroxamate import system permease protein FhuB; Ferric hydroxamate uptake protein B; Ferrichrome transport system permease protein FhuB; Ferrichrome uptake protein FhuB; Iron(III)-hydroxamate import system permease protein FhuB from Escherichia coli (strain K12) (see paper)
32% identity, 89% coverage: 70:695/702 of query aligns to 52:660/660 of P06972
- S57 (= S75) mutation to A: Decreased binding to ferrichrome-FhuD.
- D170 (≠ Q187) mutation to A: Loss of binding to ferrichrome-FhuD; when associated with A-171.
- Q171 (≠ S188) mutation to A: Loss of binding to ferrichrome-FhuD; when associated with A-170.
- M175 (≠ V192) mutation to A: No effect on ATPase activity, but 80% decrease in Fe-ferrichrome transport efficiency of the FhuCB complex compared to wild-type; when associated with A-484; A-492 and A-495.; mutation to L: No effect on ATPase activity, but 50% decrease in Fe-ferrichrome transport efficiency of the FhuCB complex compared to wild-type; when associated with L-484; L-492 and L-495.
- T182 (≠ S199) Interaction with FhuD; mutation to A: Loss of binding to ferrichrome-FhuD; when associated with A-184.
- T184 (≠ Y201) Interaction with FhuD; mutation to A: Loss of binding to ferrichrome-FhuD; when associated with A-182.
- E304 (≠ T323) Interaction with FhuD; mutation to A: Decreased binding to ferrichrome-FhuD.
- R390 (= R425) Interaction with FhuD; mutation to A: Decreased binding to ferrichrome-FhuD.
- M484 (≠ I519) mutation to A: No effect on ATPase activity, but 80% decrease in Fe-ferrichrome transport efficiency of the FhuCB complex compared to wild-type; when associated with A-175; A-492 and A-495.; mutation to L: No effect on ATPase activity, but 50% decrease in Fe-ferrichrome transport efficiency of the FhuCB complex compared to wild-type; when associated with L-175; L-492 and L-495.
- M492 (≠ T527) mutation to A: No effect on ATPase activity, but 80% decrease in Fe-ferrichrome transport efficiency of the FhuCB complex compared to wild-type; when associated with A-175; A-484 and A-495.; mutation to L: No effect on ATPase activity, but 50% decrease in Fe-ferrichrome transport efficiency of the FhuCB complex compared to wild-type; when associated with L-175; L-484 and L-495.
- M495 (≠ Q530) mutation to A: No effect on ATPase activity, but 80% decrease in Fe-ferrichrome transport efficiency of the FhuCB complex compared to wild-type; when associated with A-175; A-484 and A-492.; mutation to L: No effect on ATPase activity, but 50% decrease in Fe-ferrichrome transport efficiency of the FhuCB complex compared to wild-type; when associated with L-175; L-484 and L-492.
- Q507 (≠ R542) mutation to A: Decreased binding to ferrichrome-FhuD; when associated with A-510.
- T510 (≠ V545) mutation to A: Decreased binding to ferrichrome-FhuD; when associated with A-507.
- S515 (≠ G550) Interaction with FhuD; mutation to A: Loss of binding to ferrichrome-FhuD; when associated with A-517.
- Y517 (= Y552) Interaction with FhuD; mutation to A: Loss of binding to ferrichrome-FhuD; when associated with A-515.
- Q636 (≠ E671) mutation to A: Decreased binding to ferrichrome-FhuD.
P15029 Fe(3+) dicitrate transport system permease protein FecD; Iron(III) dicitrate transport system permease protein FecD from Escherichia coli (strain K12) (see paper)
41% identity, 41% coverage: 407:691/702 of query aligns to 37:315/318 of P15029
- R51 (= R425) mutation to C: Retains 32% of wild-type citrate-mediated Fe(3+) transport.; mutation to E: Retains 14% of wild-type citrate-mediated Fe(3+) transport.
- R54 (= R428) mutation to C: Retains 19% of wild-type citrate-mediated Fe(3+) transport.; mutation to E: Retains 24% of wild-type citrate-mediated Fe(3+) transport.
- R288 (= R664) mutation to C: Retains 65% of wild-type citrate-mediated Fe(3+) transport.; mutation to E: Retains 35% of wild-type citrate-mediated Fe(3+) transport.
P15030 Fe(3+) dicitrate transport system permease protein FecC; Iron(III) dicitrate transport system permease protein FecC from Escherichia coli (strain K12) (see paper)
37% identity, 37% coverage: 423:684/702 of query aligns to 58:322/332 of P15030
- R60 (= R425) mutation to C: Retains 33% of wild-type citrate-mediated Fe(3+) transport.; mutation to E: Retains 29% of wild-type citrate-mediated Fe(3+) transport.
- R63 (= R428) mutation to C: Retains 74% of wild-type citrate-mediated Fe(3+) transport.; mutation to E: Retains 30% of wild-type citrate-mediated Fe(3+) transport.
- R302 (= R664) mutation to C: Retains 24% of wild-type citrate-mediated Fe(3+) transport.; mutation to E: Retains 28% of wild-type citrate-mediated Fe(3+) transport.
5b57A Inward-facing conformation of abc heme importer bhuuv from burkholderia cenocepacia (see paper)
36% identity, 45% coverage: 375:690/702 of query aligns to 7:324/330 of 5b57A
Query Sequence
>BPHYT_RS20235 FitnessBrowser__BFirm:BPHYT_RS20235
MTTLAARKRLSRSTQAMDSYRAPVKSRVTTIGAALVALIVIVAVMRLAPGFRTWLAAPTG
SDAAQLAGILLFDLSVPRILAALVAGGCLAVAGTLFQSLTRNPLASPDLLGITGGAQLGL
LAAMLVPSLAGVASVPLLFACGLGAAACVAAAAGGWRATPLRLVLAGSVCMLLFSALTTL
ILAFFEQSIVGVSLWASGSLYQPGAAGLKIAASWLVLPLIALPFVIRPLDPLALGDDAAA
AAGVRVDATRLAAMVVAVGFASVAVSVAGPLSYVGLIAPNLLRQMRGAKASRLAALVPLS
ALVGGALVLVTDSAVQALDLDATLSTGVAIAFVGTPLMLAMIRSGAAWSGALHAGQERAV
ARAGTRFVRAIDARPWPLTASALVLLGVVLVCAGASFGPTTIGAQRWLAAFDHRDELARM
LLDLRLPRLICALLAGALLAASGVLMQSIVRNPLAGPEVLGVTQGAGLATLAALVMWPLA
NHSTLAAASLAGGGITLALTLLLNRRHRYAPLAVALTGIVIGTLWTTLSQWLITQQSVQP
ARFVVWLVGGTYGRSWGEVTTLLPWCVLALPVFALLARPLDLLALGDDQAASLGLPIGVL
RPLVLTVATLAACAAVAAVGPVGFIGLMAPHLASMLGARAHRTRLWLAAACGALVLVVAD
IAARTLLAPREIPAGVLTALIGAPYLLALLIVEARREKRGKR
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory