Comparing BPHYT_RS20740 BPHYT_RS20740 D-ribose transporter ATP binding protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
49% identity, 99% coverage: 1:497/503 of query aligns to 1:494/501 of P04983
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
30% identity, 44% coverage: 3:221/503 of query aligns to 1:215/241 of 4u00A
P07821 Iron(3+)-hydroxamate import ATP-binding protein FhuC; Ferric hydroxamate uptake protein C; Ferrichrome transport ATP-binding protein FhuC; Iron(III)-hydroxamate import ATP-binding protein FhuC; EC 7.2.2.16 from Escherichia coli (strain K12) (see 2 papers)
34% identity, 47% coverage: 5:240/503 of query aligns to 12:250/265 of P07821
3c4jA Abc protein artp in complex with atp-gamma-s
28% identity, 43% coverage: 4:221/503 of query aligns to 3:216/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
28% identity, 43% coverage: 4:221/503 of query aligns to 3:216/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
28% identity, 43% coverage: 4:221/503 of query aligns to 3:216/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
28% identity, 43% coverage: 4:221/503 of query aligns to 3:216/242 of 2oljA
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
33% identity, 44% coverage: 1:221/503 of query aligns to 1:222/648 of P75831
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
30% identity, 44% coverage: 1:222/503 of query aligns to 1:216/285 of 4yerA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
29% identity, 43% coverage: 4:221/503 of query aligns to 1:220/343 of P30750
Sites not aligning to the query:
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
26% identity, 43% coverage: 5:222/503 of query aligns to 3:216/235 of 6mhzA
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
29% identity, 43% coverage: 4:221/503 of query aligns to 2:221/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
29% identity, 43% coverage: 4:221/503 of query aligns to 2:221/344 of 3tuiC
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
26% identity, 43% coverage: 5:222/503 of query aligns to 3:216/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
26% identity, 43% coverage: 5:222/503 of query aligns to 3:216/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
26% identity, 43% coverage: 5:222/503 of query aligns to 3:216/233 of 6b8bA
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
29% identity, 43% coverage: 4:221/503 of query aligns to 2:221/344 of 6cvlD
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
26% identity, 43% coverage: 5:222/503 of query aligns to 3:216/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
26% identity, 43% coverage: 5:222/503 of query aligns to 3:216/238 of 6s8gA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
25% identity, 44% coverage: 4:222/503 of query aligns to 4:230/253 of 1g9xB
>BPHYT_RS20740 BPHYT_RS20740 D-ribose transporter ATP binding protein
MTPLISVKRLSKRFPGVRALHEVQFELVAGEVHALMGENGAGKSTLMKILAGVYTRDTGE
ILYEGQPVDFQSPREAQAVGVGIIHQELQLMNHLTIAQNMFIGREPRGRLGLFLDEDKLN
AQAHDILARMHVTLDPRALVSSLTVARQQMVEIAKALSFDSRVLIMDEPTSALNDAEIAE
LFRIIRDLKKRGVGIIYISHKMDELKQIADRVTVLRDGEYVATVAVKDTTVQAIIGMMVG
RTLTDAAPSQHIANQGEVALEVTRLNAGPLVRDVSFALRKGEILGFAGLMGAGRTEVARA
VFGADPIESGEIVVKGVKATIRNPSDAVARGIGYLSEDRKRFGLATGMSVESNIVMSNLR
KFLSLNFFLRRTQIRKTAAHFINLLAIRTPSATQEVRLLSGGNQQKIVIAKWLERDCDVL
FFDEPTRGIDVGAKSEIYKLLRSLADQGKAIVMISSELPEILRMSDRIVVMCEGRITGEL
AAAGATQERIMQLATQREPLNVA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory