Comparing BPHYT_RS20750 FitnessBrowser__BFirm:BPHYT_RS20750 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4rxtA Crystal structure of carbohydrate transporter solute binding protein arad_9553 from agrobacterium radiobacter, target efi-511541, in complex with d-arabinose
34% identity, 92% coverage: 23:310/312 of query aligns to 1:294/295 of 4rxtA
4wutA Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220) with bound d-fucose
33% identity, 91% coverage: 29:311/312 of query aligns to 3:290/290 of 4wutA
5dkvA Crystal structure of an abc transporter solute binding protein from agrobacterium vitis(avis_5339, target efi-511225) bound with alpha-d- tagatopyranose
35% identity, 87% coverage: 40:311/312 of query aligns to 20:301/303 of 5dkvA
Sites not aligning to the query:
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
28% identity, 88% coverage: 29:301/312 of query aligns to 3:273/274 of 2ioyA
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
27% identity, 83% coverage: 29:286/312 of query aligns to 5:269/287 of 5dteB
3ksmA Crystal structure of abc-type sugar transport system, periplasmic component from hahella chejuensis
28% identity, 84% coverage: 31:292/312 of query aligns to 5:270/276 of 3ksmA
7e7mC Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
30% identity, 84% coverage: 40:301/312 of query aligns to 22:279/284 of 7e7mC
Sites not aligning to the query:
5hqjA Crystal structure of abc transporter solute binding protein b1g1h7 from burkholderia graminis c4d1m, target efi-511179, in complex with d-arabinose
28% identity, 84% coverage: 40:302/312 of query aligns to 19:285/289 of 5hqjA
Sites not aligning to the query:
8wlbA X-ray structure of enterobacter cloacae allose-binding protein in complex with d-psicose (see paper)
29% identity, 82% coverage: 31:287/312 of query aligns to 6:277/288 of 8wlbA
8wl9A X-ray structure of enterobacter cloacae allose-binding protein in complex with d-ribose (see paper)
29% identity, 82% coverage: 31:287/312 of query aligns to 6:277/288 of 8wl9A
1rpjA Crystal structure of d-allose binding protein from escherichia coli (see paper)
28% identity, 79% coverage: 31:275/312 of query aligns to 6:263/288 of 1rpjA
1gudA Hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations (see paper)
28% identity, 79% coverage: 31:275/312 of query aligns to 6:263/288 of 1gudA
Sites not aligning to the query:
6guqA Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with glucose
24% identity, 84% coverage: 31:291/312 of query aligns to 6:266/278 of 6guqA
6gt9A Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with galactose
24% identity, 84% coverage: 31:291/312 of query aligns to 11:271/283 of 6gt9A
2h3hA Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
26% identity, 76% coverage: 38:273/312 of query aligns to 12:246/313 of 2h3hA
Sites not aligning to the query:
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
26% identity, 74% coverage: 38:269/312 of query aligns to 12:242/305 of 3c6qC
Sites not aligning to the query:
5xssA Xylfii molecule (see paper)
26% identity, 82% coverage: 29:283/312 of query aligns to 6:260/274 of 5xssA
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
25% identity, 84% coverage: 29:289/312 of query aligns to 5:261/270 of 4zjpA
5ibqA Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
23% identity, 83% coverage: 29:288/312 of query aligns to 5:263/287 of 5ibqA
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
23% identity, 83% coverage: 29:288/312 of query aligns to 5:263/287 of 4ry0A
>BPHYT_RS20750 FitnessBrowser__BFirm:BPHYT_RS20750
MLKRKLIGVVVGVGALIGGTSVTYADTYIPLISKGFQHQFWQAVKSGAEQSAKEHNVRIT
FEGPETEAMVDKQIDMLSAALAKKPQALGIAALDSKAAIPLLKRAQASKIPVIAFDSGVD
SDIPLTTCATDNLAAAALAADKMAEAIGNAGEVGVIVHDQTSRTGIDRRDGFLNEMKSKH
PNIKIVSVQYGGGDHLKSAEIAKTMIQANPNLKGIFGANEGSAEGAAIGVKESGKKLVLI
GYDSGKEQKDDINSGLMAGAITQNPVGIGKCVVDSAVKALKGEKLPKKVDTGFYWYDKTN
MTDPKIAAVLYD
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory