SitesBLAST
Comparing BPHYT_RS21100 BPHYT_RS21100 methylmalonate-semialdehyde dehydrogenase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4zz7A Crystal structure of methylmalonate-semialdehyde dehydrogenase (dddc) from oceanimonas doudoroffii (see paper)
60% identity, 96% coverage: 4:486/501 of query aligns to 1:482/489 of 4zz7A
- active site: N149 (= N154), K172 (= K177), L246 (= L251), C280 (= C285), E382 (= E386), A462 (≠ I466)
- binding nicotinamide-adenine-dinucleotide: T146 (= T151), P147 (= P152), F148 (= F153), N149 (= N154), K172 (= K177), E175 (= E180), K205 (= K210), V208 (= V213), F222 (= F227), V223 (= V228), G224 (= G229), S225 (= S230), I228 (= I233), L246 (= L251), G247 (= G252), C280 (= C285), E382 (= E386), F384 (= F388)
5tjrD X-ray crystal structure of a methylmalonate semialdehyde dehydrogenase from pseudomonas sp. Aac (see paper)
57% identity, 98% coverage: 7:497/501 of query aligns to 3:468/468 of 5tjrD
- active site: N144 (= N154), K167 (= K177), L241 (= L251), C270 (= C285), E356 (= E386), A436 (≠ I466)
- binding adenosine-5'-diphosphate: I140 (= I150), T141 (= T151), F143 (= F153), K167 (= K177), E170 (= E180), K200 (= K210), F217 (= F227), S220 (= S230), I223 (= I233)
4iymC Crystal structure of putative methylmalonate-semialdehyde dehydrogenase from sinorhizobium meliloti 1021 complexed with NAD, target 011934
57% identity, 96% coverage: 7:489/501 of query aligns to 7:489/491 of 4iymC
- active site: N153 (= N154), K176 (= K177), F250 (≠ L251), C284 (= C285), E386 (= E386), Q466 (≠ I466)
- binding nicotinamide-adenine-dinucleotide: I149 (= I150), T150 (= T151), P151 (= P152), F152 (= F153), N153 (= N154), F154 (= F155), K176 (= K177), K209 (= K210), V212 (= V213), F226 (= F227), V227 (= V228), G228 (= G229), S229 (= S230), I232 (= I233), G251 (= G252), C284 (= C285), E386 (= E386), F388 (= F388)
P42412 Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis (strain 168) (see 3 papers)
47% identity, 97% coverage: 1:486/501 of query aligns to 1:482/487 of P42412
- C36 (≠ A37) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-160; A-287; A-351 and A-413.
- R107 (= R108) mutation to L: At least 50-fold decrease of the second-order rate constant for the acylation step.
- A150 (≠ T151) binding
- F152 (= F153) binding
- C160 (≠ M161) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-287; A-351 and A-413.
- K176 (= K177) binding
- E179 (= E180) binding
- R180 (= R181) binding
- S229 (= S230) binding
- T251 (≠ G252) binding
- R283 (= R284) mutation to L: At least 50-fold decrease of the second-order rate constant for the acylation step.
- C287 (≠ I288) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-160; A-351 and A-413.
- C351 (≠ V352) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-160; A-287 and A-413.
- E382 (= E386) binding
- C413 (≠ A417) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-160; A-287 and A-351.
1t90A Crystal structure of methylmalonate semialdehyde dehydrogenase from bacillus subtilis
47% identity, 96% coverage: 4:486/501 of query aligns to 2:480/484 of 1t90A
- active site: N151 (= N154), K174 (= K177), L248 (= L251), C282 (= C285), E380 (= E386), A460 (≠ I466)
- binding nicotinamide-adenine-dinucleotide: I147 (= I150), A148 (≠ T151), P149 (= P152), F150 (= F153), N151 (= N154), W159 (= W162), K174 (= K177), E177 (= E180), R178 (= R181), H207 (≠ K210), V225 (= V228), G226 (= G229), S227 (= S230), V230 (≠ I233), L248 (= L251), T249 (≠ G252), C282 (= C285), E380 (= E386), F382 (= F388)
P49189 4-trimethylaminobutyraldehyde dehydrogenase; TMABA-DH; TMABALDH; Aldehyde dehydrogenase E3 isozyme; Aldehyde dehydrogenase family 9 member A1; Formaldehyde dehydrogenase; Gamma-aminobutyraldehyde dehydrogenase; R-aminobutyraldehyde dehydrogenase; EC 1.2.1.47; EC 1.2.1.3; EC 1.2.1.46; EC 1.2.1.19 from Homo sapiens (Human) (see 2 papers)
30% identity, 96% coverage: 9:491/501 of query aligns to 13:493/494 of P49189
- C116 (≠ V112) to S: in allele ALDH9A1*2
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed; alternate
- 2 modified: N-acetylserine; in 4-trimethylaminobutyraldehyde dehydrogenase, N-terminally processed
6vr6D Structure of aldh9a1 complexed with NAD+ in space group p1 (see paper)
30% identity, 96% coverage: 9:491/501 of query aligns to 12:492/493 of 6vr6D
- active site: N156 (= N154), E253 (≠ L251), C287 (= C285), E467 (≠ H464)
- binding nicotinamide-adenine-dinucleotide: I152 (= I150), G153 (≠ T151), W155 (≠ F153), K179 (= K177), A212 (≠ K210), G215 (≠ V213), Q216 (≠ D214), F229 (= F227), G231 (= G229), S232 (= S230), T235 (≠ I233), I239 (≠ V237)
1bpwA Betaine aldehyde dehydrogenase from cod liver (see paper)
29% identity, 95% coverage: 9:482/501 of query aligns to 22:493/503 of 1bpwA
- active site: N166 (= N154), K189 (= K177), E263 (≠ L251), C297 (= C285), E400 (= E386), E477 (≠ H464)
- binding nicotinamide-adenine-dinucleotide: I162 (= I150), L163 (≠ T151), W165 (≠ F153), N166 (= N154), K189 (= K177), G221 (≠ D209), G225 (≠ V213), T240 (≠ V228), G241 (= G229), S242 (= S230), T245 (≠ I233), E263 (≠ L251), L264 (≠ G252), C297 (= C285), E400 (= E386), F402 (= F388), F466 (= F453)
P56533 4-trimethylaminobutyraldehyde dehydrogenase; TMABA-DH; TMABADH; Aldehyde dehydrogenase family 9 member A1; Betaine aldehyde dehydrogenase; BADH; EC 1.2.1.47; EC 1.2.1.3 from Gadus morhua subsp. callarias (Baltic cod) (Gadus callarias) (see paper)
29% identity, 95% coverage: 9:482/501 of query aligns to 22:493/503 of P56533
Q9HTJ1 NAD/NADP-dependent betaine aldehyde dehydrogenase; BADH; EC 1.2.1.8 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
31% identity, 96% coverage: 1:481/501 of query aligns to 1:479/490 of Q9HTJ1
- GAWN 150:153 (≠ TPFN 151:154) binding
- K162 (≠ M163) active site, Charge relay system
- KPSE 176:179 (= KPSE 177:180) binding
- G209 (vs. gap) binding
- GTST 230:233 (≠ STPI 230:233) binding
- E252 (≠ G252) active site, Proton acceptor
- C286 (= C285) binding covalent; modified: Cysteine sulfenic acid (-SOH)
- E387 (= E386) binding
- E464 (≠ H464) active site, Charge relay system
8skfA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (lattice translocation disorder)
31% identity, 96% coverage: 1:481/501 of query aligns to 8:486/497 of 8skfA
- binding calcium ion: T33 (≠ V27), I34 (≠ F28), D100 (≠ E94), V187 (≠ R181)
- binding nicotinamide-adenine-dinucleotide: I156 (= I150), G157 (≠ T151), A158 (≠ P152), W159 (≠ F153), K183 (= K177), E186 (= E180), G216 (≠ K210), G220 (vs. gap), T235 (≠ V228), G236 (= G229), G237 (≠ S230), S240 (≠ I233), K243 (≠ Y236), E259 (≠ G252), C293 (= C285), F396 (= F388)
4neaA 1.90 angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betb) from staphylococcus aureus in complex with NAD+ and bme-free cys289 (see paper)
30% identity, 95% coverage: 9:482/501 of query aligns to 20:492/505 of 4neaA
- active site: N166 (= N154), K189 (= K177), E264 (≠ L251), C298 (= C285), E399 (= E386), E476 (≠ H464)
- binding nicotinamide-adenine-dinucleotide: P164 (= P152), K189 (= K177), E192 (= E180), G222 (≠ K210), G226 (vs. gap), G242 (= G229), G243 (≠ S230), T246 (≠ I233), H249 (≠ Y236), I250 (≠ V237), C298 (= C285), E399 (= E386), F401 (= F388)
4cazA Crystal structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa in complex with nadh
32% identity, 94% coverage: 13:481/501 of query aligns to 11:478/489 of 4cazA
- active site: N152 (= N154), K175 (= K177), E251 (≠ G252), C285 (= C285), E386 (= E386), E463 (≠ H464)
- binding [[(2R,3S,4R,5R)-5-[(3R)-3-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate: I148 (= I150), G149 (≠ T151), W151 (≠ F153), N152 (= N154), K175 (= K177), E178 (= E180), G208 (vs. gap), G212 (≠ V213), F226 (= F227), T227 (≠ V228), G228 (= G229), G229 (≠ S230), T232 (≠ I233), V236 (= V237), E251 (≠ G252), L252 (vs. gap), C285 (= C285), E386 (= E386), F388 (= F388)
2woxA Betaine aldehyde dehydrogenase from pseudomonas aeruginosa with NAD(p) h-catalytic thiol adduct. (see paper)
32% identity, 94% coverage: 13:481/501 of query aligns to 11:478/489 of 2woxA
- active site: N152 (= N154), K175 (= K177), E251 (≠ G252), C285 (= C285), E386 (= E386), E463 (≠ H464)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I148 (= I150), G149 (≠ T151), W151 (≠ F153), N152 (= N154), K175 (= K177), S177 (= S179), E178 (= E180), G208 (vs. gap), G212 (≠ V213), F226 (= F227), T227 (≠ V228), G228 (= G229), G229 (≠ S230), T232 (≠ I233), V236 (= V237), E251 (≠ G252), L252 (vs. gap), C285 (= C285), E386 (= E386), F388 (= F388)
2wmeA Crystallographic structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa (see paper)
32% identity, 94% coverage: 13:481/501 of query aligns to 11:478/489 of 2wmeA
- active site: N152 (= N154), K175 (= K177), E251 (≠ G252), C285 (= C285), E386 (= E386), E463 (≠ H464)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G149 (≠ T151), W151 (≠ F153), K175 (= K177), S177 (= S179), E178 (= E180), G208 (vs. gap), G212 (≠ V213), F226 (= F227), G228 (= G229), G229 (≠ S230), T232 (≠ I233), V236 (= V237)
8vr1A Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (ctp bound)
32% identity, 94% coverage: 10:481/501 of query aligns to 8:477/488 of 8vr1A
8vr0A Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (gmp bound)
32% identity, 94% coverage: 10:481/501 of query aligns to 8:477/488 of 8vr0A
8vqzA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (cmp bound)
32% identity, 94% coverage: 10:481/501 of query aligns to 8:477/488 of 8vqzA
8vqwC Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (coa bound)
32% identity, 94% coverage: 10:481/501 of query aligns to 8:477/488 of 8vqwC
- binding coenzyme a: I147 (= I150), W150 (≠ F153), K174 (= K177), S176 (= S179), E177 (= E180), G207 (≠ K210), G211 (vs. gap), F225 (= F227), G227 (= G229), G228 (≠ S230), S231 (≠ I233), H331 (≠ A332), F387 (= F388)
8vj3A Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (fad bound)
32% identity, 94% coverage: 10:481/501 of query aligns to 8:477/488 of 8vj3A
Query Sequence
>BPHYT_RS21100 BPHYT_RS21100 methylmalonate-semialdehyde dehydrogenase
MTNLETISHFINGQRTASLRNAETQAVFNPALGEAVAQVAMGSAEDIHAAVGAAAAAFPA
WSARPPLARARILAKYLQLMQQHTDTLAQMLTREHGKTLDDARGEVARGLEVVEFAVGIP
HLLKGEFSDQISRGIDAWSIRQPLGVVAGITPFNFPAMVPMWMFPIALACGNTFVLKPSE
RDPSCSLLHAELLKEAGLPDGVFNVVQGDKAVVDALLDHPEVQAVSFVGSTPIAEYVYAR
ASANGKRAQALGGAKNHLVVMPDADMAMATDALIGAAFGSAGERCMAISVAVAVGDVGDR
LVAALAERTRALKIDDGTAPGAEMGPVITAAARERIESLIGAGVADGATLVVDGRDYRVP
GRESGFFVGGTLFDHVTPEMTVYREEIFGPVLCVVRVPNVAAAVELINAHEYGNGVAVFT
RDGGVAREFTRQVQIGMVGVNVPVPVPMAFNSFGGWKRSLFGDHHIYGPEGVRFYTRHKA
VMQRWPDTITAGAEFAFPQHN
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory