SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS24005 BPHYT_RS24005 ABC transporter permease to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
33% identity, 88% coverage: 4:215/240 of query aligns to 6:200/215 of 4ymtC

query
sites
4ymtC
I
 
L
Q
 
S
M
 
M
L
 
V
G
 
K
F
 
Y
G
 
T
P
 
P
E
 
L
G
 
F
W
 
I
G
 
S
G
 
G
V
 
L
L
 
I
L
 
-
L
 
-
A
 
-
A
 
-
L
 
-
M
 
M
T
 
T
V
 
L
A
 
K
L
 
L
T
 
T
L
 
F
A
 
L
A
 
A
L
 
V
A
 
T
V
 
I
G
 
G
A
 
V
V
 
L
F
 
M
G
 
G
A
 
L
L
 
F
V
 
I
A
 
A
A
 
L
A
 
M
K
 
K
L
 
M
S
 
S
R
 
S
F
 
I
R
 
K
T
 
P
L
 
I
R
 
K
V
 
L
I
 
V
G
 
A
D
 
S
I
 
S
Y
 
Y
T
 
I
T
 
E
V
 
V
F
 
I
R
 
R
G
 
G
V
 
T
P
|
P
E
x
L
L
 
L
L
 
V
V
 
Q
I
 
L
Y
 
L
L
 
L
F
 
I
Y
 
Y
F
 
N
G
 
G
G
 
L
S
 
M
T
 
Q
L
 
-
V
 
-
T
 
-
S
 
-
V
 
-
G
 
-
Q
 
-
L
 
-
F
 
F
G
 
G
A
 
-
E
 
-
G
 
-
F
 
-
V
 
M
G
 
N
V
 
I
P
 
P
P
 
A
F
 
F
V
 
T
V
 
A
G
 
G
A
 
V
L
 
S
A
 
A
V
 
L
G
 
A
M
 
I
I
x
N
S
 
S
G
 
S
A
 
A
Y
|
Y
Q
 
V
A
 
A
E
 
E
V
 
I
Y
 
I
R
 
R
S
 
A
A
 
G
V
 
I
L
 
Q
A
 
A
V
 
V
S
 
D
R
 
P
G
 
G
E
 
Q
L
 
N
E
 
E
A
 
A
A
 
A
R
 
R
S
 
S
I
 
L
G
 
G
M
 
M
P
 
T
T
 
H
L
 
A
T
 
M
M
 
A
A
 
M
R
 
R
R
 
Y
I
 
V
L
 
I
I
 
I
P
 
P
Q
 
Q
V
 
A
L
 
I
R
 
K
F
 
N
A
 
I
L
 
L
P
 
P
G
 
A
I
 
L
G
 
G
N
 
N
V
x
E
W
 
F
Q
 
I
L
 
V
S
x
M
L
 
L
K
|
K
D
x
E
S
 
S
A
 
A
L
 
I
I
 
V
S
 
S
V
 
V
T
 
I
G
 
G
L
 
F
A
 
A
E
 
D
L
 
L
L
 
T
R
 
R
T
 
Q
S
 
A
Q
 
D
V
 
I
A
 
I
A
 
Q
G
 
S
S
 
V
T
 
T
H
 
Y
Q
 
R
Y
 
Y
F
 
F
T
 
E
F
 
P
F
 
Y
V
 
I
V
 
I
G
 
I
G
 
A
A
 
A
L
 
I
Y
 
Y
L
 
F
I
 
V
M
 
M
T
 
T

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
34% identity, 80% coverage: 23:215/240 of query aligns to 20:200/214 of 4ymwC

query
sites
4ymwC
L
 
I
M
 
M
T
 
T
V
 
L
A
 
K
L
 
L
T
 
T
L
 
F
A
 
L
A
 
A
L
 
V
A
 
T
V
 
I
G
 
G
A
 
V
V
 
L
F
 
M
G
 
G
A
 
L
L
 
F
V
 
I
A
 
A
A
 
L
A
 
M
K
 
K
L
 
M
S
 
S
R
 
S
F
 
I
R
 
K
T
 
P
L
 
I
R
 
K
V
 
L
I
 
V
G
 
A
D
 
S
I
 
S
Y
 
Y
T
 
I
T
 
E
V
 
V
F
 
I
R
 
R
G
 
G
V
 
T
P
 
P
E
 
L
L
 
L
L
 
V
V
 
Q
I
 
L
Y
 
L
L
 
L
F
 
I
Y
 
Y
F
 
N
G
 
G
G
 
L
S
 
M
T
 
Q
L
 
-
V
 
-
T
 
-
S
 
-
V
 
-
G
 
-
Q
 
-
L
 
-
F
 
F
G
 
G
A
 
-
E
 
-
G
 
-
F
 
-
V
 
M
G
 
N
V
 
I
P
 
P
P
 
A
F
 
F
V
 
T
V
 
A
G
 
G
A
 
V
L
 
S
A
 
A
V
 
L
G
 
A
M
 
I
I
x
N
S
 
S
G
 
S
A
 
A
Y
|
Y
Q
 
V
A
 
A
E
 
E
V
 
I
Y
 
I
R
 
R
S
 
A
A
 
G
V
 
I
L
 
Q
A
 
A
V
 
V
S
 
D
R
 
P
G
 
G
E
 
Q
L
 
N
E
 
E
A
 
A
A
 
A
R
 
R
S
 
S
I
 
L
G
 
G
M
 
M
P
 
T
T
 
H
L
 
A
T
 
M
M
 
A
A
 
M
R
 
R
R
 
Y
I
 
V
L
 
I
I
 
I
P
 
P
Q
 
Q
V
 
A
L
 
I
R
 
K
F
 
N
A
 
I
L
 
L
P
 
P
G
 
A
I
 
L
G
 
G
N
 
N
V
x
E
W
 
F
Q
 
I
L
 
V
S
 
M
L
 
L
K
 
K
D
x
E
S
 
S
A
 
A
L
 
I
I
 
V
S
 
S
V
 
V
T
 
I
G
 
G
L
 
F
A
 
A
E
 
D
L
 
L
L
 
T
R
 
R
T
 
Q
S
 
A
Q
 
D
V
 
I
A
 
I
A
 
Q
G
 
S
S
 
V
T
 
T
H
 
Y
Q
 
R
Y
 
Y
F
 
F
T
 
E
F
 
P
F
 
Y
V
 
I
V
 
I
G
 
I
G
 
A
A
 
A
L
 
I
Y
 
Y
L
 
F
I
 
V
M
 
M
T
 
T

Query Sequence

>BPHYT_RS24005 BPHYT_RS24005 ABC transporter permease
MALIQMLGFGPEGWGGVLLLAALMTVALTLAALAVGAVFGALVAAAKLSRFRTLRVIGDI
YTTVFRGVPELLVIYLFYFGGSTLVTSVGQLFGAEGFVGVPPFVVGALAVGMISGAYQAE
VYRSAVLAVSRGELEAARSIGMPTLTMARRILIPQVLRFALPGIGNVWQLSLKDSALISV
TGLAELLRTSQVAAGSTHQYFTFFVVGGALYLIMTSISNRVFNRAEAHVGRSFKRNFARN

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory