SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS24045 BPHYT_RS24045 amino acid ABC transporter to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
36% identity, 98% coverage: 4:214/216 of query aligns to 12:215/215 of 4ymtC

query
sites
4ymtC
T
 
T
T
 
P
V
 
L
F
 
F
L
 
I
Q
 
S
G
 
G
L
 
L
P
 
I
L
 
M
L
 
T
L
 
L
H
 
K
A
 
L
A
 
T
L
 
F
A
 
L
T
 
A
I
 
V
G
 
T
I
 
I
S
 
-
L
 
-
A
 
-
G
 
G
L
 
V
L
 
L
I
 
M
G
 
G
F
 
L
F
 
F
V
 
I
A
 
A
I
 
L
G
 
-
V
 
-
C
 
-
A
 
-
A
 
M
R
 
K
L
 
M
S
 
S
P
 
S
N
 
I
R
 
K
A
 
P
A
 
I
R
 
K
M
 
L
F
 
V
G
 
A
G
 
S
A
 
S
Y
 
Y
V
 
I
F
 
E
F
 
V
F
 
I
R
 
R
G
 
G
V
 
T
P
|
P
M
x
L
L
 
L
V
 
V
Q
 
Q
L
 
L
L
 
L
L
 
L
V
 
I
Y
 
Y
Y
 
N
L
 
G
L
 
L
P
 
M
F
 
Q
A
 
F
G
 
G
I
 
M
N
 
N
V
 
I
S
 
P
P
 
A
I
 
F
V
 
T
A
 
A
A
 
G
L
 
V
S
 
S
A
 
A
V
 
L
S
 
A
L
 
I
C
x
N
S
 
S
A
 
S
S
 
A
Y
|
Y
I
 
V
A
 
A
E
 
E
I
 
I
L
 
I
R
 
R
G
 
A
G
 
G
F
 
I
L
 
Q
S
 
A
V
 
V
P
 
D
P
 
P
G
 
G
H
 
Q
L
 
N
E
 
E
A
 
A
A
 
A
R
 
R
M
 
S
L
 
L
G
 
G
L
 
M
S
 
T
P
 
H
F
 
A
D
 
M
M
 
A
L
 
M
R
 
R
R
 
Y
I
 
V
L
 
I
V
 
I
P
 
P
Q
 
Q
A
 
A
F
 
I
R
 
K
L
 
N
T
 
I
L
 
L
P
 
P
S
 
A
L
 
L
V
 
G
N
 
N
E
|
E
M
 
F
V
 
I
L
 
V
L
x
M
I
 
L
K
|
K
A
x
E
S
 
S
S
 
A
L
 
I
I
 
V
S
 
S
V
 
V
V
 
I
G
 
G
V
 
F
A
 
A
E
 
D
L
 
L
T
 
T
R
 
R
T
 
Q
A
 
A
Q
 
D
N
 
I
I
 
I
A
 
Q
A
 
S
S
 
V
T
 
T
Y
 
Y
R
 
R
P
 
Y
L
 
F
E
 
E
A
 
P
Y
 
Y
V
 
I
A
 
I
A
 
I
G
 
A
L
 
A
I
 
I
Y
 
Y
F
 
F
V
 
V
I
 
M
C
 
T
G
 
L
A
 
T
L
 
F
A
 
S
L
 
K
V
 
L
A
 
L
H
 
S
A
 
L
A
 
F
E
 
E
Y
 
R
R
 
R
L
 
L
Q
 
R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
37% identity, 97% coverage: 4:213/216 of query aligns to 12:214/214 of 4ymwC

query
sites
4ymwC
T
 
T
T
 
P
V
 
L
F
 
F
L
 
I
Q
 
S
G
 
G
L
 
L
P
 
I
L
 
M
L
 
T
L
 
L
H
 
K
A
 
L
A
 
T
L
 
F
A
 
L
T
 
A
I
 
V
G
 
T
I
 
I
S
 
-
L
 
-
A
 
-
G
 
G
L
 
V
L
 
L
I
 
M
G
 
G
F
 
L
F
 
F
V
 
I
A
 
A
I
 
L
G
 
-
V
 
-
C
 
-
A
 
-
A
 
M
R
 
K
L
 
M
S
 
S
P
 
S
N
 
I
R
 
K
A
 
P
A
 
I
R
 
K
M
 
L
F
 
V
G
 
A
G
 
S
A
 
S
Y
 
Y
V
 
I
F
 
E
F
 
V
F
 
I
R
 
R
G
 
G
V
 
T
P
 
P
M
 
L
L
 
L
V
 
V
Q
 
Q
L
 
L
L
 
L
L
 
L
V
 
I
Y
 
Y
Y
 
N
L
 
G
L
 
L
P
 
M
F
 
Q
A
 
F
G
 
G
I
 
M
N
 
N
V
 
I
S
 
P
P
 
A
I
 
F
V
 
T
A
 
A
A
 
G
L
 
V
S
 
S
A
 
A
V
 
L
S
 
A
L
 
I
C
x
N
S
 
S
A
 
S
S
 
A
Y
|
Y
I
 
V
A
 
A
E
 
E
I
 
I
L
 
I
R
 
R
G
 
A
G
 
G
F
 
I
L
 
Q
S
 
A
V
 
V
P
 
D
P
 
P
G
 
G
H
 
Q
L
 
N
E
 
E
A
 
A
A
 
A
R
 
R
M
 
S
L
 
L
G
 
G
L
 
M
S
 
T
P
 
H
F
 
A
D
 
M
M
 
A
L
 
M
R
 
R
R
 
Y
I
 
V
L
 
I
V
 
I
P
 
P
Q
 
Q
A
 
A
F
 
I
R
 
K
L
 
N
T
 
I
L
 
L
P
 
P
S
 
A
L
 
L
V
 
G
N
 
N
E
|
E
M
 
F
V
 
I
L
 
V
L
 
M
I
 
L
K
 
K
A
x
E
S
 
S
S
 
A
L
 
I
I
 
V
S
 
S
V
 
V
V
 
I
G
 
G
V
 
F
A
 
A
E
 
D
L
 
L
T
 
T
R
 
R
T
 
Q
A
 
A
Q
 
D
N
 
I
I
 
I
A
 
Q
A
 
S
S
 
V
T
 
T
Y
 
Y
R
 
R
P
 
Y
L
 
F
E
 
E
A
 
P
Y
 
Y
V
 
I
A
 
I
A
 
I
G
 
A
L
 
A
I
 
I
Y
 
Y
F
 
F
V
 
V
I
 
M
C
 
T
G
 
L
A
 
T
L
 
F
A
 
S
L
 
K
V
 
L
A
 
L
H
 
S
A
 
L
A
 
F
E
 
E
Y
 
R
R
 
R
L
 
L

Query Sequence

>BPHYT_RS24045 BPHYT_RS24045 amino acid ABC transporter
MFSTTVFLQGLPLLLHAALATIGISLAGLLIGFFVAIGVCAARLSPNRAARMFGGAYVFF
FRGVPMLVQLLLVYYLLPFAGINVSPIVAALSAVSLCSASYIAEILRGGFLSVPPGHLEA
ARMLGLSPFDMLRRILVPQAFRLTLPSLVNEMVLLIKASSLISVVGVAELTRTAQNIAAS
TYRPLEAYVAAGLIYFVICGALALVAHAAEYRLQHA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory