Comparing BPHYT_RS24160 FitnessBrowser__BFirm:BPHYT_RS24160 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
6u7lA 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. (see paper)
58% identity, 99% coverage: 6:529/529 of query aligns to 5:460/460 of 6u7lA
>BPHYT_RS24160 FitnessBrowser__BFirm:BPHYT_RS24160
MEQSPLYIRVHPNDNVAIVVNDGGLGEGAVFPDGLALRERVPQGHKVALADLAEGDEVIR
YNVVIGYALKALPKGSWINEHVIRMPSPPGLEDLPIATIKAPDMPPLEGYTFEGYRNADG
SVGSRNILAITTTVQCVADVVQHAVTRIKAELLPRYPNVDDVVSLGHTYGCGVAIDAPDA
MVPIRTVRNISLNPNFGGEVMMVSLGCEKLQPERLMPPGTIPIAAAANVAEVADIGDIEA
DLNGDVVVLQDESHVGFQSMIESIMKMADGHLKRLNNRRRETCPASDLVIGVQCGGSDAF
SGLTANPAVGYATDLLVRAGATVMFSEVTEVRDGVDQLTARAANPEVAAAIIREMQWYDD
YLKRGGADRSANTTPGNKKGGLSNIVEKAMGSIIKSGNSAISGVLSPGEKVKQKGLIYAA
TPASDFICGTLQVAAGINLHVFTTGRGTPYSLAEVPVIKVATRSDLARRWHDLMDINAGT
IATGESTIEEVGWELFRLMLDVASGRKETCAEKLKLHNALTLFNPAPVT
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory