Comparing BPHYT_RS24185 FitnessBrowser__BFirm:BPHYT_RS24185 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
33% identity, 98% coverage: 8:447/450 of query aligns to 6:425/427 of 8b01B
>BPHYT_RS24185 FitnessBrowser__BFirm:BPHYT_RS24185
MELAILSVSFLVFLLLGVPVSFGLGLACVLTYLYEGLPAATAMQSMISGINGFSFLAVPF
FILSGELMLHGGIADRILRFAQATVGHFRGGLGMANVVACTLFGGVSGSPSADTSAMGGV
VIPLMKREGYSAAYAVNVTTHSSLAGALMPTSTNMIIYAFAAQGITGTLNGHPMSGVSIG
DLLFSGLLPVLWVMGFVLIAAYWQAVKYGYPRRADGSTELQKFPGWYAVARTFLGALPGL
MVIAIILVCVAKGIATATEAAAIAVFYSLVLTIVVYRSMTMKKLFHALSKAAKTTGVVLL
LIGVSNMLRYQMAYLEIPDAIEHMLDGATSLPWLMLLYINLIQIFLGTFVDMAAHILITT
PLFLPMAMHAGVGPVQFGIMILLNCALGLVHPPIGSVQFIGCAIGNVSIGETTKVAWPYY
LAIFSAINIVTYVPMFSTWLPSLINGHPVF
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory