SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS25070 FitnessBrowser__BFirm:BPHYT_RS25070 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
35% identity, 45% coverage: 129:264/300 of query aligns to 60:195/506 of A0A0H2ZQB9

query
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A0A0H2ZQB9
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Sites not aligning to the query:

B5Z7I3 Ergothioneine transport permease/ergothioneine binding protein EgtU from Helicobacter pylori (strain G27) (see paper)
26% identity, 72% coverage: 78:293/300 of query aligns to 50:260/553 of B5Z7I3

query
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B5Z7I3
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Sites not aligning to the query:

Query Sequence

>BPHYT_RS25070 FitnessBrowser__BFirm:BPHYT_RS25070
MSEVIPLGAWVDHGVHYLLDHDAKTFDSIGKVIESFAAVIEHGLQAVPMWALMAFFVGIG
LWRVGWRFALFTLLAMLLIYGTGFWDQMVITLGLTLSSTLISLLLGVPLGIWTAKSRTVE
MIVRPVLDLMQTMPAFVYLIPAAMLFGLGRVPGILSTVIFAMPPAVRLTSLGIKHVNREI
VEAGQAFGCTPLQLLYKVQFPNALPSIMTGVNQTIMMALSMVIIASMVGAGGLGNDVLAS
IQRLDIGLGFESGLSVVMLAIILDRITESFGRSPGTARAPLLSGLRSVMKVRRQPAAQHG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory