Comparing BPHYT_RS25795 FitnessBrowser__BFirm:BPHYT_RS25795 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5hqjA Crystal structure of abc transporter solute binding protein b1g1h7 from burkholderia graminis c4d1m, target efi-511179, in complex with d-arabinose
29% identity, 73% coverage: 32:274/334 of query aligns to 9:251/289 of 5hqjA
4pz0A The crystal structure of a solute binding protein from bacillus anthracis str. Ames in complex with quorum-sensing signal autoinducer-2 (ai-2)
26% identity, 88% coverage: 36:329/334 of query aligns to 15:321/321 of 4pz0A
4wzzA Crystal structure of an abc transporter solute binding protein (ipr025997) from clostridium phytofermentas (cphy_0583, target efi- 511148) with bound l-rhamnose
26% identity, 87% coverage: 26:316/334 of query aligns to 2:303/321 of 4wzzA
6guqA Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with glucose
26% identity, 75% coverage: 41:290/334 of query aligns to 14:260/278 of 6guqA
Sites not aligning to the query:
6gt9A Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with galactose
26% identity, 75% coverage: 41:290/334 of query aligns to 19:265/283 of 6gt9A
Sites not aligning to the query:
4wutA Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220) with bound d-fucose
26% identity, 86% coverage: 29:315/334 of query aligns to 2:289/290 of 4wutA
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
28% identity, 70% coverage: 67:299/334 of query aligns to 38:286/305 of 3c6qC
Sites not aligning to the query:
2h3hA Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
28% identity, 70% coverage: 67:299/334 of query aligns to 38:286/313 of 2h3hA
Sites not aligning to the query:
1tjyA Crystal structure of salmonella typhimurium ai-2 receptor lsrb in complex with r-thmf (see paper)
23% identity, 92% coverage: 29:334/334 of query aligns to 4:316/316 of 1tjyA
8wlbA X-ray structure of enterobacter cloacae allose-binding protein in complex with d-psicose (see paper)
30% identity, 61% coverage: 67:270/334 of query aligns to 40:249/288 of 8wlbA
Sites not aligning to the query:
8wl9A X-ray structure of enterobacter cloacae allose-binding protein in complex with d-ribose (see paper)
30% identity, 61% coverage: 67:270/334 of query aligns to 40:249/288 of 8wl9A
Sites not aligning to the query:
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
31% identity, 66% coverage: 31:250/334 of query aligns to 5:229/287 of 5dteB
Sites not aligning to the query:
1rpjA Crystal structure of d-allose binding protein from escherichia coli (see paper)
30% identity, 61% coverage: 67:270/334 of query aligns to 40:249/288 of 1rpjA
Sites not aligning to the query:
1gudA Hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations (see paper)
30% identity, 61% coverage: 67:270/334 of query aligns to 40:249/288 of 1gudA
Sites not aligning to the query:
3t95A Crystal structure of lsrb from yersinia pestis complexed with autoinducer-2 (see paper)
22% identity, 92% coverage: 29:334/334 of query aligns to 2:314/314 of 3t95A
6dspA Lsrb from clostridium saccharobutylicum in complex with ai-2 (see paper)
24% identity, 83% coverage: 30:306/334 of query aligns to 2:288/326 of 6dspA
5dkvA Crystal structure of an abc transporter solute binding protein from agrobacterium vitis(avis_5339, target efi-511225) bound with alpha-d- tagatopyranose
29% identity, 57% coverage: 75:263/334 of query aligns to 52:248/303 of 5dkvA
Sites not aligning to the query:
4rxtA Crystal structure of carbohydrate transporter solute binding protein arad_9553 from agrobacterium radiobacter, target efi-511541, in complex with d-arabinose
25% identity, 83% coverage: 30:307/334 of query aligns to 6:286/295 of 4rxtA
3ejwA Crystal structure of the sinorhizobium meliloti ai-2 receptor, smlsrb (see paper)
23% identity, 72% coverage: 66:307/334 of query aligns to 38:280/315 of 3ejwA
Sites not aligning to the query:
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
26% identity, 66% coverage: 71:292/334 of query aligns to 41:259/274 of 2ioyA
Sites not aligning to the query:
>BPHYT_RS25795 FitnessBrowser__BFirm:BPHYT_RS25795
MKLTRLGAALAAGALTVGVIAAAQAATNETIVTVVKVTGINWFNRMDDGVKQFAKDNPNI
NAYQTGPGRADAAQQLKIIEDLIAKKVTAIAVVPYDPPTLEPALKKAMDRGIKVVTHEAD
NAKNTMVDIEAFDNTAYGAGLNERLASCMHDDGKWAVLVGSLGSRSQVQWADGGIGNAKA
KYPKMNLVEPKLETNNDGERAYEVAKEVLRKHPDLKGFQGSSSLDVIGIGRAVEEAGMQG
KICVYGTGLPTEAGKFLESGAINGIAFWDPKLAGIAMNKVAQMLVDGKTVENGADLGIPG
YTKVTVAKGPGKGIIVRGQGWVNVDKSNYKQYPF
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory