Comparing BPHYT_RS26525 FitnessBrowser__BFirm:BPHYT_RS26525 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3ip9A Structure of atu2422-gaba receptor in complex with gaba (see paper)
37% identity, 89% coverage: 30:370/383 of query aligns to 3:338/348 of 3ip9A
3ip7A Structure of atu2422-gaba receptor in complex with valine (see paper)
37% identity, 89% coverage: 30:370/383 of query aligns to 3:338/348 of 3ip7A
3ip6A Structure of atu2422-gaba receptor in complex with proline (see paper)
37% identity, 89% coverage: 30:370/383 of query aligns to 3:338/348 of 3ip6A
3ip5A Structure of atu2422-gaba receptor in complex with alanine (see paper)
37% identity, 89% coverage: 30:370/383 of query aligns to 3:338/348 of 3ip5A
3ipcA Structure of atu2422-gaba f77a mutant receptor in complex with leucine (see paper)
37% identity, 89% coverage: 30:370/383 of query aligns to 3:338/348 of 3ipcA
1uskA L-leucine-binding protein with leucine bound (see paper)
34% identity, 88% coverage: 30:366/383 of query aligns to 3:335/345 of 1uskA
1usiA L-leucine-binding protein with phenylalanine bound (see paper)
34% identity, 88% coverage: 30:366/383 of query aligns to 3:335/345 of 1usiA
1z18A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound valine (see paper)
33% identity, 86% coverage: 30:357/383 of query aligns to 3:324/344 of 1z18A
1z17A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound ligand isoleucine (see paper)
33% identity, 86% coverage: 30:357/383 of query aligns to 3:324/344 of 1z17A
1z16A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound leucine (see paper)
33% identity, 86% coverage: 30:357/383 of query aligns to 3:324/344 of 1z16A
4n0qB Crystal structure of an abc transporter, substrate-binding protein from brucella melitensis 16m in complex with l-leucine using a crystal grown in a crystal former (microlytic)
33% identity, 89% coverage: 30:371/383 of query aligns to 3:341/345 of 4n0qB
3td9A Crystal structure of a leucine binding protein livk (tm1135) from thermotoga maritima msb8 at 1.90 a resolution
30% identity, 86% coverage: 29:359/383 of query aligns to 1:327/350 of 3td9A
4gnrA 1.0 angstrom resolution crystal structure of the branched-chain amino acid transporter substrate binding protein livj from streptococcus pneumoniae str. Canada mdr_19a in complex with isoleucine
30% identity, 88% coverage: 28:364/383 of query aligns to 1:333/348 of 4gnrA
4mlcA Abc transporter substrate-binding protein fromdesulfitobacterium hafniense
27% identity, 89% coverage: 34:373/383 of query aligns to 4:334/336 of 4mlcA
4q6bA Crystal structure of abc transporter substrate-binding protein fromdesulfitobacterium hafniense complex with leu
27% identity, 89% coverage: 34:373/383 of query aligns to 4:333/335 of 4q6bA
4q6wA Crystal structure of periplasmic binding protein type 1 from bordetella pertussis tohama i complexed with 3-hydroxy benzoic acid
27% identity, 84% coverage: 30:351/383 of query aligns to 4:345/376 of 4q6wA
4rv5A The crystal structure of a solute-binding protein from anabaena variabilis atcc 29413 in complex with pyruvic acid
23% identity, 89% coverage: 30:368/383 of query aligns to 3:350/364 of 4rv5A
4obbA The crystal structure of a solute-binding protein from anabaena variabilis atcc 29413 in complex with (3s)-3-methyl-2-oxopentanoic acid.
23% identity, 89% coverage: 30:368/383 of query aligns to 3:350/364 of 4obbA
4rdcA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with proline
23% identity, 89% coverage: 30:368/383 of query aligns to 3:350/364 of 4rdcA
4qymA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with methionine
23% identity, 89% coverage: 30:368/383 of query aligns to 3:350/364 of 4qymA
>BPHYT_RS26525 FitnessBrowser__BFirm:BPHYT_RS26525
MNRRYWLLSATVCALATYMPFSWAADPQIVKIGFVGPLTGPVARVGKDLQYGAQLALDEE
NAKNPMIGGKPVKFVLDVQDDQADPRVAIQVAQKLVDDGVVGVIGHYNSGCSIPASTVYH
QANVAMITPGSTNPQLTKQGFKNVFRTMGHDGIGGVVAGHFVVEQMKAKRIAIIDDRTAF
GQGLADAFEKGVKEANGNIVDREFTNDKAIDFRAILTTLKSKNVDLIFFGGLDEQGAMLV
KQMRSLGMSTQLFGAGALKSNAFLQIAGTAGNGTQDLEPGPALDKLPAAQAFGKRYKARF
NQDVELYAPFSYDAALAMLKAIHTADSLDRAKIVDSLAKVTVTGVTGNITFDPYGDLIKP
PYTLFQVEQGQWKSVKTVGGSGA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory