Comparing BPHYT_RS27440 FitnessBrowser__BFirm:BPHYT_RS27440 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2h12B Structure of acetobacter aceti citrate synthase complexed with oxaloacetate and carboxymethyldethia coenzyme a (cmx) (see paper)
67% identity, 99% coverage: 7:432/432 of query aligns to 1:426/426 of 2h12B
4jagA Structural determination of the a50t:s279g:s280k:v281k:k282e:h283n variant of citrate synthase from e. Coli complexed with oxaloacetate (see paper)
64% identity, 100% coverage: 3:432/432 of query aligns to 1:426/426 of 4jagA
4jaeA Structural determination of the a50t:s279g:s280k:v281k:k282e:h283n variant of citrate synthase from e. Coli complexed with s- carboxymethyl-coa (see paper)
64% identity, 100% coverage: 3:432/432 of query aligns to 1:426/426 of 4jaeA
P0ABH7 Citrate synthase; EC 2.3.3.16 from Escherichia coli (strain K12) (see 2 papers)
64% identity, 100% coverage: 3:432/432 of query aligns to 2:427/427 of P0ABH7
1owbA Three dimensional structure analysis of the variant r109l nadh complex of type ii citrate synthase from e. Coli (see paper)
64% identity, 100% coverage: 3:432/432 of query aligns to 1:426/426 of 1owbA
1nxgA The f383a variant of type ii citrate synthase complexed with nadh (see paper)
64% identity, 100% coverage: 3:432/432 of query aligns to 1:426/426 of 1nxgA
P9WPD5 Citrate synthase 1; EC 2.3.3.16 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
54% identity, 99% coverage: 7:432/432 of query aligns to 8:431/431 of P9WPD5
3msuB Crystal structure of citrate synthase from francisella tularensis
52% identity, 97% coverage: 6:424/432 of query aligns to 11:424/426 of 3msuB
3msuA Crystal structure of citrate synthase from francisella tularensis
51% identity, 97% coverage: 6:424/432 of query aligns to 11:413/415 of 3msuA
4tvmA Structure of citrate synthase from mycobacterium tuberculosis (see paper)
47% identity, 97% coverage: 7:425/432 of query aligns to 2:376/380 of 4tvmA
6abxA Crystal structure of citrate synthase (msed_1522) from metallosphaera sedula in complex with citrate (see paper)
36% identity, 89% coverage: 49:432/432 of query aligns to 6:370/370 of 6abxA
6abyA Crystal structure of citrate synthase (msed_1522) from metallosphaera sedula in complex with oxaloacetate (see paper)
36% identity, 89% coverage: 49:432/432 of query aligns to 6:370/372 of 6abyA
6abwA Crystal structure of citrate synthase (msed_0281) from metallosphaera sedula in complex with acetyl-coa (see paper)
36% identity, 87% coverage: 57:432/432 of query aligns to 7:369/369 of 6abwA
1aj8A Citrate synthase from pyrococcus furiosus (see paper)
37% identity, 87% coverage: 57:432/432 of query aligns to 12:370/371 of 1aj8A
P39120 Citrate synthase 2; Citrate synthase II; EC 2.3.3.16 from Bacillus subtilis (strain 168) (see paper)
36% identity, 89% coverage: 49:432/432 of query aligns to 6:371/372 of P39120
1iomA Crystal structure of citrate synthase from thermus thermophilus hb8 (see paper)
35% identity, 89% coverage: 49:432/432 of query aligns to 4:374/374 of 1iomA
1ixeA Crystal structure of citrate synthase from thermus thermophilus hb8 (see paper)
35% identity, 89% coverage: 49:432/432 of query aligns to 4:371/371 of 1ixeA
6s87D Crystal structure of 2-methylcitrate synthase (prpc) from pseudomonas aeruginosa in complex with oxaloacetate.
32% identity, 89% coverage: 49:432/432 of query aligns to 1:365/365 of 6s87D
O34002 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium DS2-3R (see 2 papers)
33% identity, 88% coverage: 45:425/432 of query aligns to 5:377/379 of O34002
Sites not aligning to the query:
1a59A Cold-active citrate synthase (see paper)
33% identity, 88% coverage: 45:425/432 of query aligns to 3:375/377 of 1a59A
>BPHYT_RS27440 FitnessBrowser__BFirm:BPHYT_RS27440
MNSKTHATLSFSDSDQTIDLPIYQGTLGPDVIDIRKLYGQTGKFTYDPGFMSTAACNSEI
TYIDGDKGELLYRGYPIDNLAQNADFLETCYLLLKGELPNAQQKEEFVKTVTQHTMVHDQ
MHFFFRGFRRDAHPMAILVAAVGALSAFYHDSLDIGNPLHRDISAIRMIAKLPTLVAMAY
KYTVGQPFVYPKNDLSYSANFMRMMFSSPAQEYKVNDVLVRALDRILILHADHEQNASTS
TVRLAGSSGANPFACIAAGIACLWGPAHGGANEAALNMLEEIGSVDNIPEFIAKVKDKDS
GVKLMGFGHRVYKNYDPRAKLMRETCHEVLEELGLHDDPLFKLAMALEKIALEDEYFVSR
KLYPNVDFYSGIVQRALGIPTAMFTCIFAMARTVGWIAQWNEMIADPEQKIGRPRQLFVG
ESQREATPLAKR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory