Comparing BPHYT_RS27975 FitnessBrowser__BFirm:BPHYT_RS27975 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 4 hits to proteins with known functional sites (download)
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
34% identity, 89% coverage: 28:310/318 of query aligns to 5:277/285 of 7cagA
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
30% identity, 75% coverage: 75:311/318 of query aligns to 259:508/514 of P02916
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
30% identity, 71% coverage: 76:301/318 of query aligns to 245:483/490 of 4ki0F
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
25% identity, 91% coverage: 5:294/318 of query aligns to 2:288/313 of P94529
>BPHYT_RS27975 FitnessBrowser__BFirm:BPHYT_RS27975
MLANKPFSSAGLESRASARARTRLAGLSDRTIAWLFILPTVLLLLAINIFPLIWALRLSF
TNFKSNMPSVPARFVGIDNYVDILTDEDIWYAMQVTARFVFWSVGLEVLLGFGLALLINR
QFRGHSFWTTLILLPMMLSPAVVGNFWTFLLQPQTGLFNDIVGFFTGIAPGSFQMIGDVS
LAPWTIVMVDTWMWTPYVMLICLAGLRSIPDYIYEAAEVDRATPWRQFWSITLPMTLPFL
MLAVLFRGIENFKMFDMVNLLTSGGPGSVTETVSITLKRAAFEKWQTGYSSALAIILFVT
VFGAANIYVKALNRVKQR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory