Comparing BPHYT_RS28200 FitnessBrowser__BFirm:BPHYT_RS28200 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4wzzA Crystal structure of an abc transporter solute binding protein (ipr025997) from clostridium phytofermentas (cphy_0583, target efi- 511148) with bound l-rhamnose
39% identity, 88% coverage: 36:330/335 of query aligns to 8:314/321 of 4wzzA
4pz0A The crystal structure of a solute binding protein from bacillus anthracis str. Ames in complex with quorum-sensing signal autoinducer-2 (ai-2)
31% identity, 90% coverage: 33:335/335 of query aligns to 8:321/321 of 4pz0A
1tjyA Crystal structure of salmonella typhimurium ai-2 receptor lsrb in complex with r-thmf (see paper)
33% identity, 91% coverage: 31:335/335 of query aligns to 2:316/316 of 1tjyA
3t95A Crystal structure of lsrb from yersinia pestis complexed with autoinducer-2 (see paper)
31% identity, 90% coverage: 34:335/335 of query aligns to 3:314/314 of 3t95A
3ejwA Crystal structure of the sinorhizobium meliloti ai-2 receptor, smlsrb (see paper)
31% identity, 90% coverage: 34:335/335 of query aligns to 3:315/315 of 3ejwA
5hqjA Crystal structure of abc transporter solute binding protein b1g1h7 from burkholderia graminis c4d1m, target efi-511179, in complex with d-arabinose
30% identity, 81% coverage: 33:302/335 of query aligns to 7:271/289 of 5hqjA
6dspA Lsrb from clostridium saccharobutylicum in complex with ai-2 (see paper)
25% identity, 90% coverage: 33:335/335 of query aligns to 1:326/326 of 6dspA
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
27% identity, 66% coverage: 62:282/335 of query aligns to 23:246/305 of 3c6qC
Sites not aligning to the query:
2h3hA Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
27% identity, 66% coverage: 62:282/335 of query aligns to 23:246/313 of 2h3hA
Sites not aligning to the query:
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
27% identity, 75% coverage: 35:285/335 of query aligns to 3:248/274 of 2ioyA
4wutA Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220) with bound d-fucose
27% identity, 63% coverage: 69:278/335 of query aligns to 38:248/290 of 4wutA
Sites not aligning to the query:
6gt9A Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with galactose
19% identity, 78% coverage: 30:291/335 of query aligns to 4:262/283 of 6gt9A
6guqA Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with glucose
19% identity, 76% coverage: 37:291/335 of query aligns to 6:257/278 of 6guqA
5xssA Xylfii molecule (see paper)
23% identity, 74% coverage: 34:281/335 of query aligns to 5:249/274 of 5xssA
5ibqA Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
27% identity, 76% coverage: 35:289/335 of query aligns to 5:247/287 of 5ibqA
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
27% identity, 76% coverage: 35:289/335 of query aligns to 5:247/287 of 4ry0A
7x0hA Crystal structure of sugar binding protein cbpa complexed wtih glucose from clostridium thermocellum (see paper)
29% identity, 38% coverage: 66:192/335 of query aligns to 41:167/287 of 7x0hA
Sites not aligning to the query:
3ksmA Crystal structure of abc-type sugar transport system, periplasmic component from hahella chejuensis
24% identity, 72% coverage: 50:291/335 of query aligns to 26:260/276 of 3ksmA
Sites not aligning to the query:
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
24% identity, 70% coverage: 34:267/335 of query aligns to 4:241/287 of 5dteB
Sites not aligning to the query:
1rpjA Crystal structure of d-allose binding protein from escherichia coli (see paper)
25% identity, 73% coverage: 36:278/335 of query aligns to 5:253/288 of 1rpjA
>BPHYT_RS28200 FitnessBrowser__BFirm:BPHYT_RS28200
MFKPLRHTGTAALCVALLAISCAASAADLKSGLKIAFVPKQINNPYEVIADDGGMTAIKE
FKGVGKAVGPSDAGASSQVQYINTLITQRQDAIVIAANDANAVVPYLKKAMSQGIKVVTF
DSDTAPEGRQLFVNQANAEGIGRGQVQLVSKLMGGEGEFAVLSATPNATNQNTWIKWMQE
ELKKPEYSKIKLVKIAYGNDDDQKSFTETQGLLQAYPNLKAIVAPTTVGIAAAARYISTS
SSKGKVAVTGLGTPNQMRAFVKNGTVKAFQLWDPGQLGYLAAYAAAALASGTISGKEGES
FDAGKLGKRTIGPQGEIILGPPTTFDSSNIDNFNF
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory