SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS28225 FitnessBrowser__BFirm:BPHYT_RS28225 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 5 hits to proteins with known functional sites (download)

2qlxA Crystal structure of rhamnose mutarotase rhau of rhizobium leguminosarum in complex with l-rhamnose (see paper)
55% identity, 96% coverage: 1:103/107 of query aligns to 5:107/108 of 2qlxA

query
sites
2qlxA
M
 
L
E
 
E
T
 
K
I
 
H
A
 
A
F
 
F
R
 
K
M
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M
V
 
Q
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L
N
 
N
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P
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G
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M
R
 
E
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A
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E
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Y
E
 
R
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D
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E
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N
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M

2qlwB Crystal structure of rhamnose mutarotase rhau of rhizobium leguminosarum (see paper)
55% identity, 96% coverage: 1:103/107 of query aligns to 5:107/108 of 2qlwB

query
sites
2qlwB
M
 
L
E
 
E
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K
I
 
H
A
 
A
F
 
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K
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M
V
 
Q
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N
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P
G
 
G
M
 
M
R
 
E
E
 
A
E
 
E
Y
 
Y
E
 
R
R
 
K
R
 
R
H
 
H
A
 
D
Q
 
E
I
 
I
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W
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P
E
 
E
L
 
L
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V
D
 
D
A
 
L
L
 
L
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H
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Q
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S
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G
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A
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D
 
D
Y
 
Y
R
 
S
I
 
I
F
 
H
F
 
L
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D
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R
D
 
E
S
 
T
N
 
N
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L
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F
A
 
G
I
 
V
L
 
L
T
 
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R
 
R
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D
H
 
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D
 
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Y
 
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M
A
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D
 
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I
 
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M
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M
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M

1x8dA Crystal structure of e. Coli yiil protein containing l-rhamnose (see paper)
42% identity, 93% coverage: 5:103/107 of query aligns to 5:103/104 of 1x8dA

query
sites
1x8dA
A
 
A
F
 
F
R
 
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M
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N
 
N
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P
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D
M
 
A
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H
E
 
E
E
 
E
Y
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Y
E
 
Q
R
 
R
R
 
R
H
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H
A
 
N
Q
 
P
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
V
 
E
D
 
A
A
 
V
L
 
L
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K
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S
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H
G
 
G
V
 
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H
D
 
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A
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I
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Y
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D
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K
D
 
A
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N
H
 
L
L
 
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F
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A
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E
R
 
I
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E
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E
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E
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M
 
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C
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K
Y
 
Y
M
 
M
A
 
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D
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A
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N
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L

P32156 L-rhamnose mutarotase; Rhamnose 1-epimerase; Type-3 mutarotase; EC 5.1.3.32 from Escherichia coli (strain K12) (see paper)
42% identity, 93% coverage: 5:103/107 of query aligns to 5:103/104 of P32156

query
sites
P32156
A
 
A
F
 
F
R
 
V
M
 
M
V
 
Q
L
 
V
N
 
N
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P
G
 
D
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A
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E
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E
Y
|
Y
E
 
Q
R
 
R
R
 
R
H
 
H
A
 
N
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P
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
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E
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A
A
 
V
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L
H
 
K
N
 
S
A
 
H
G
 
G
V
 
A
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H
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N
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Y
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A
I
 
I
F
 
Y
F
 
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D
 
D
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K
D
 
A
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R
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N
H
 
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L
 
L
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F
A
 
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E
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I
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E
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E
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A
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K
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S
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E
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Y
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L

7bywA Crystal structure of acidovorax avenae l-fucose mutarotase (l-fucose- bound form) (see paper)
30% identity, 89% coverage: 10:104/107 of query aligns to 9:108/108 of 7bywA

query
sites
7bywA
L
 
I
N
 
K
P
 
P
G
 
E
M
 
H
R
 
I
E
 
D
E
 
E
Y
|
Y
E
 
K
R
 
R
R
 
L
H
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H
A
 
A
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A
I
 
V
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W
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P
E
 
A
L
 
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V
 
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D
 
A
A
 
R
L
 
L
H
 
A
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E
A
 
A
G
 
H
V
 
V
R
 
R
D
 
N
Y
|
Y
R
 
S
I
 
I
F
 
F
F
 
L
D
 
R
P
 
E
D
 
P
S
 
E
N
 
N
H
 
L
L
 
L
F
 
F
A
 
G
I
 
Y
L
 
W
T
 
E
R
 
Y
N
 
H
S
 
G
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T
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D
-
 
Y
H
 
A
H
 
A
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D
M
 
M
D
 
E
E
 
A
L
 
I
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A
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Q
L
 
D
D
 
P
V
 
E
M
 
T
R
 
R
K
 
R
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W
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W
D
 
T
Y
 
F
M
 
-
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C
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E
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M
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D

Query Sequence

>BPHYT_RS28225 FitnessBrowser__BFirm:BPHYT_RS28225
METIAFRMVLNPGMREEYERRHAQIWPELVDALHNAGVRDYRIFFDPDSNHLFAILTRNS
HHTMDELPQLDVMRKWWDYMADIMHTGPDHTPVQQPLEPVFHLNSLS

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory