SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS28580 FitnessBrowser__BFirm:BPHYT_RS28580 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

H1ZZB0 Aurachin B dehydrogenase; EC 1.1.1.394 from Stigmatella aurantiaca (see paper)
29% identity, 74% coverage: 1:240/323 of query aligns to 1:224/334 of H1ZZB0

query
sites
H1ZZB0
M
 
M
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T
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V
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T
G
 
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N
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I
 
L
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A
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L
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A
A
 
R
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G
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I
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S
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R
A
 
A
L
 
L
A
 
V
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R
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S
D
 
E
E
 
E
S
 
A
A
 
A
A
 
Q
T
 
K
V
 
V
S
 
Q
A
 
A
L
 
L
G
 
G
A
 
A
K
 
Q
A
 
P
R
 
I
R
 
L
G
 
G
D
 
T
L
 
L
S
 
E
D
 
H
L
 
R
A
 
E
G
 
T
L
 
L
K
 
K
A
 
E
A
 
G
A
 
M
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A
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G
S
 
C
D
 
D
G
 
V
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L
I
 
F
H
 
H
V
 
A
G
 
A
Y
 
-
R
 
-
A
 
-
D
 
-
L
 
-
L
 
-
Q
 
-
A
 
A
G
 
L
G
 
T
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S
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A
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R
L
 
A
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E
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H
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R
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A
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N
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L
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G
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T
E
 
E
A
 
T
L
 
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L
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A
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A
G
 
A
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A
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R
V
 
I
A
 
Q
G
 
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M
I
 
V
G
 
H
A
 
V
P
x
S
T
 
T
N
 
E
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-
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-
A
 
-
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-
L
 
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-
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A
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L
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A
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Y
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A
A
 
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A
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A
E
 
E
T
 
Q
A
 
L
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L
G
 
Q
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A
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G
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F
R
 
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T
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V
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V
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R
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P
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-
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-
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T
 
G
A
 
A
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D
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D
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A
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F
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L
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I
 
Q
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L
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D
L
 
A
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I
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V
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D
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G
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G
E
 
R
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Y
R
 
L
W
 
T
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T
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C
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H
I
 
V
R
 
A
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N
L
 
V
A
 
C
S
 
E
L
 
G
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M
R
 
L
L
 
L
A
 
A
L
 
A
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E
K
 
R
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G
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P
A
 
G
G
 
G
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E
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V
W
 
Y

Query Sequence

>BPHYT_RS28580 FitnessBrowser__BFirm:BPHYT_RS28580
MHVFVTGGTGHAGSHIIPDLVAAGHEVTALARTDESAATVSALGAKARRGDLSDLAGLKA
AAAESDGVIHVGYRADLLQAGGIAALGDSELSIVLAFGEALAGTGKPLVVAGSIGAPTNV
GRGAPLVAPVSLGRPATEDDPALPGRPLDAGTLRARNVVETAVVGLAEQGVRSSVVRIPL
IAHSTADRVGFLQILIGLAKEKGVIGYPGDGENRWPAVHIRDLASLFRLALEKGPAGKTW
HAVADEGIRFREIAEAIAARLGVPAVSIPADELMVPGYFGFLSAVVTGDFPASNAITRKS
LGWEPAQPGLLEDMDNGHYFPAG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory