Comparing BPHYT_RS28730 FitnessBrowser__BFirm:BPHYT_RS28730 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
6u7lA 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. (see paper)
38% identity, 91% coverage: 33:488/503 of query aligns to 40:446/460 of 6u7lA
>BPHYT_RS28730 FitnessBrowser__BFirm:BPHYT_RS28730
MRLNPADDVVIALEQLMSGTVIDKEAVTVSGLIPPGHKVATRDIRQGEAVHRYGQVIGFA
SQPIRAGQHVHTHNLAMGDFARDYAFGQAARPTLPSNRPATFQGIVRADGRVATRNYIGI
LTSVNCSATVARAIADHFRRDIHPEELAEFPNVDGVIALTHGSGCAIDSEGDGLAILQRT
IGGYACHPNFASVLVVGLGCETNQIPRLLETQGLREHDRLRTFTIQDSGGTTSTIAKGIE
LVRRMLPEANDVRREAVSASHLTVGLQCGGSDGYSGITANPVLGAAVDLLVRHGGTAILS
ETPEIYGAEHLLTRRAATPEVGRKLLDRIRWWEAYANRHGAQMNNNPSAGNKAGGLTTVL
EKSLGGIAKAGSTNLTEVYEYAQPVTARGLVFMDTPGYDPVSATGQVAGGANLICFTTGR
GSAYGCAPTPSVKLATNTALWQRQSDDMDLNCGEVLEGRTTIEQLGGVLFELLLEVASGN
RTRSEQHGYGQNEFVPWQISAIM
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory