Comparing BPHYT_RS32820 FitnessBrowser__BFirm:BPHYT_RS32820 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3ma0A Closed liganded crystal structure of xylose binding protein from escherichia coli (see paper)
62% identity, 89% coverage: 37:339/342 of query aligns to 4:307/313 of 3ma0A
4ywhA Crystal structure of an abc transporter solute binding protein (ipr025997) from actinobacillus succinogenes 130z (asuc_0499, target efi-511068) with bound d-xylose
62% identity, 87% coverage: 38:336/342 of query aligns to 6:305/310 of 4ywhA
3uugA Crystal structure of the periplasmic sugar binding protein chve (see paper)
35% identity, 89% coverage: 34:339/342 of query aligns to 1:328/329 of 3uugA
3urmA Crystal structure of the periplasmic sugar binding protein chve (see paper)
35% identity, 89% coverage: 34:339/342 of query aligns to 1:328/329 of 3urmA
4ys6A Crystal structure of an abc transporter solute binding protein (ipr025997) from clostridium phytofermentans (cphy_1585, target efi- 511156) with bound beta-d-glucose
33% identity, 88% coverage: 38:339/342 of query aligns to 3:323/324 of 4ys6A
4wwhA Crystal structure of an abc transporter solute binding protein (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi- 510967) with bound d-galactose
35% identity, 88% coverage: 38:339/342 of query aligns to 5:328/329 of 4wwhA
4rxuA Crystal structure of carbohydrate transporter solute binding protein caur_1924 from chloroflexus aurantiacus, target efi-511158, in complex with d-glucose
35% identity, 84% coverage: 49:335/342 of query aligns to 17:332/340 of 4rxuA
Sites not aligning to the query:
6ruxA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
29% identity, 85% coverage: 38:326/342 of query aligns to 13:370/373 of 6ruxA
6s3tA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
29% identity, 85% coverage: 38:326/342 of query aligns to 15:372/374 of 6s3tA
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
32% identity, 77% coverage: 38:299/342 of query aligns to 3:260/274 of 2ioyA
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
31% identity, 70% coverage: 34:273/342 of query aligns to 1:244/287 of 5dteB
Sites not aligning to the query:
4ry9B Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
29% identity, 85% coverage: 37:326/342 of query aligns to 4:288/297 of 4ry9B
4ry9A Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
29% identity, 85% coverage: 37:326/342 of query aligns to 4:288/297 of 4ry9A
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
31% identity, 63% coverage: 79:295/342 of query aligns to 50:263/287 of 4yo7A
Sites not aligning to the query:
4rxmB Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
31% identity, 63% coverage: 58:272/342 of query aligns to 25:238/288 of 4rxmB
Sites not aligning to the query:
4rxmA Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
31% identity, 63% coverage: 58:272/342 of query aligns to 27:240/291 of 4rxmA
Sites not aligning to the query:
A0QYB3 Xylitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
30% identity, 76% coverage: 72:330/342 of query aligns to 70:312/349 of A0QYB3
Sites not aligning to the query:
4rs3A Crystal structure of carbohydrate transporter a0qyb3 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with xylitol (see paper)
30% identity, 76% coverage: 72:330/342 of query aligns to 37:279/315 of 4rs3A
Sites not aligning to the query:
5hkoA Crystal structure of abc transporter solute binding protein msmeg_3598 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with l-sorbitol
30% identity, 76% coverage: 72:330/342 of query aligns to 37:279/314 of 5hkoA
Sites not aligning to the query:
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
30% identity, 71% coverage: 53:296/342 of query aligns to 13:256/270 of 4zjpA
>BPHYT_RS32820 FitnessBrowser__BFirm:BPHYT_RS32820
MKFATRRTVLSSLVCGAVLASLSLVAPLAHASKDHPEIGFCIDDLRVERWSRDRDYFVAA
AEKLGAKVSVQSADASEARQISQIENLISRGVDVIVIVPFNSKTLGNVVAEAKKAGIKVV
SYDRLILDADVDAYISFDNEKVGELQAQGVYNAQPKGNYFLLGGAPTDNNAKMLREGQLK
ILKPAIDKGDIKVVGQQWVPEWSASTALRIVEDALTANNNKIDAIVASNDGTAGGAIQAL
AAQHMAGKVPVSGQDADLAAVKRVIAGTQTMTVYKPLKLIAGEAAKLSVALAKGEKPAFN
SQYDNGKKKVDTVLLQPTLLTKSNVDVVVKDGFYSQAQLASQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory