Comparing BPHYT_RS33290 FitnessBrowser__BFirm:BPHYT_RS33290 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
25% identity, 85% coverage: 10:261/298 of query aligns to 33:286/313 of P94529
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
26% identity, 90% coverage: 10:276/298 of query aligns to 12:274/285 of 7cagA
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
25% identity, 81% coverage: 37:276/298 of query aligns to 233:489/490 of 4ki0F
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
25% identity, 81% coverage: 37:276/298 of query aligns to 248:504/514 of P02916
>BPHYT_RS33290 FitnessBrowser__BFirm:BPHYT_RS33290
MNKPVNQKAWLLVVPVFICVAFSAILPLMTVVNYSVQDIISPTQHVFVGTEWFRAIINDD
DLRGALGRQIIFSACVLLFEIPLGVGLALAMPASGWRASASLVVLAMPLLIPWNVVGTIW
QIFGRPDIGLLGYALNHAGVEYNYTASPAAAWITVLVMDIWHWTPLVALLCYAGLRAIPD
AFYQAAEIDGASRFAVFRYIELPKMRGVLMIAVLLRFMDSFMIYTEPFVLTGGGPGDSTT
FLSQYLTQKAVGQFDLGPAAAFSLIYFLIILLLCFILYNWMERVGKGGPASSGEDYAQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory