SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BPHYT_RS34460 FitnessBrowser__BFirm:BPHYT_RS34460 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
31% identity, 82% coverage: 3:187/225 of query aligns to 2:178/214 of 4ymwC

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4ymwC
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I

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
31% identity, 82% coverage: 3:187/225 of query aligns to 2:178/215 of 4ymtC

query
sites
4ymtC
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I

Query Sequence

>BPHYT_RS34460 FitnessBrowser__BFirm:BPHYT_RS34460
MFNIDWQALADSKGIVLAGMGVTLQITFVAILCGLLWGTVLAVLHRSPQRAVRVFAQGYV
ALFRSIPLVMLLLWFFLIVPQFLKALFNLPAGVDVRLISAMVAYSLLEAAFFCEIIRAGI
ESLPRGQAQAALALGMTAGQTMRYVILPQAFRAMVPVALTQCIVIFQDTSLVYVIALGDF
FRRVSAIGERDGTVVPMLLFAGVAYWSITTGLTVTVKVVRTRLAK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory