Comparing BPHYT_RS35660 BPHYT_RS35660 membrane protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 3 hits to proteins with known functional sites (download)
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
29% identity, 93% coverage: 20:283/283 of query aligns to 22:280/281 of P94530
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
35% identity, 74% coverage: 74:283/283 of query aligns to 87:295/296 of P68183
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
28% identity, 56% coverage: 78:236/283 of query aligns to 75:242/285 of 7cagA
>BPHYT_RS35660 BPHYT_RS35660 membrane protein
MSLSVKMKRSLWCWLALSPLVVVVLFPFAVMLFTALKPASEIFVYPARWLPVHWQWSNFS
DMWVAANFGVALRNSTVISLLSTALALAVSLPAAYALARFPFRGRGLYRQFLLVTQMLSP
ILLVVGLFRLAAMIPYGDGNLVDSKIGVIVSYAAFNIAFAVWMLSSYFQTVPRDLEESAW
LEGCGRTKAVFKVFLPLAVPAIVVTAIFTFINAWNEFAVVYTLIRSPENKTLTVQVTDMV
AGKYVVQWHLVMAATLCATLPVSVVFAWLQRYLVKGLALGAVK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory