SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS03560 FitnessBrowser__Koxy:BWI76_RS03560 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 4 hits to proteins with known functional sites (download)

Q9XDN5 Phosphate propanoyltransferase; Phosphate acyltransferase PduL; Phosphotransacylase PduL; PTAC; Propanediol utilization protein PduL; EC 2.3.1.222 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
55% identity, 86% coverage: 21:198/206 of query aligns to 22:199/210 of Q9XDN5

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Q9XDN5
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Sites not aligning to the query:

Q21A54 Phosphate propanoyltransferase; Phosphate acyltransferase PduL; Phosphotransacylase PduL; PTAC; Propanediol utilization protein PduL; EC 2.3.1.222 from Rhodopseudomonas palustris (strain BisB18) (see paper)
52% identity, 86% coverage: 21:198/206 of query aligns to 40:217/226 of Q21A54

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Q21A54
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Sites not aligning to the query:

5cupA Structure of rhodopseudomonas palustris pdul - phosphate bound form (see paper)
52% identity, 86% coverage: 21:198/206 of query aligns to 5:182/189 of 5cupA

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5cupA
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5cuoB Structure of rhodopseudomonas palustris pdul - coa bound form (see paper)
52% identity, 86% coverage: 21:198/206 of query aligns to 5:182/189 of 5cuoB

query
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5cuoB
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Query Sequence

>BWI76_RS03560 FitnessBrowser__Koxy:BWI76_RS03560
MIDTLLHEKIAARLSHVAPAIPVGISNRHVHLAQQDVEALFGKGYVLTPFKPLRQPGQFA
AQECVTVVGPKGSLTQVRVLGPTRPVSQLEISRADCFTLGIKAPVRESGQLENAGSALLI
GPAGHVELRSQVICAWRHIHMSPQDARHLNVANGQKVSVRSDGERQLTFDEVVVRVREDF
ALEFHIDTEEANAAGLKNGAQVTLIG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory