SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS04450 FitnessBrowser__Koxy:BWI76_RS04450 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3qdqA Complex between 4-hydroxybutyrate coa-transferase from clostridium aminobutyricum and coa (see paper)
27% identity, 49% coverage: 247:493/508 of query aligns to 195:433/447 of 3qdqA

query
sites
3qdqA
E
 
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R

Query Sequence

>BWI76_RS04450 FitnessBrowser__Koxy:BWI76_RS04450
MKETVAMLNQQYVMPEGLAPYAGVTAKSPWLASESEKRQRKICASLEEAIRRSGLQNGMT
ISFHHAFRGGDKVVNMVVAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVIRQIYTSGL
RGKLGEEISAGLMENPVQIHSHGGRAYLVQSGELNIDVAFLGVPCCDEYGNANGFSGKSR
CGSLGYAKVDADAAKCVVLLTEEWVDYPNYPASIAQDQVDLIVQVDEVGDPAKITAGAIR
LTSNPRELLIARQAAKVIEHSGYFKDGFSLQTGTGGASLAVTRFLEDKMRRHNITASFGL
GGITGTMVDLHEKGLIKALLDTQSFDGDAARSLANNPNHIEISANQYANPGSKGIACERL
NVVMLSALEIDTGFNVNVMTGSNGVLRGASGGHCDTAAGADLTIITAPLVRGRIPCVVEK
VLTRVTPGASVDVLVTDHGIAVNPARQDLIDRLRQADIPLMTIEALQQRAELLTGKPEPI
AFTDRVVAVVRYRDGSVIDVIHQVKSAG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory