SitesBLAST
Comparing BWI76_RS04950 FitnessBrowser__Koxy:BWI76_RS04950 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
1kv9A Structure at 1.9 a resolution of a quinohemoprotein alcohol dehydrogenase from pseudomonas putida hk5 (see paper)
28% identity, 77% coverage: 161:773/796 of query aligns to 11:521/664 of 1kv9A
- active site: E173 (≠ D354), N250 (≠ V422), D295 (= D466)
- binding acetone: E173 (≠ D354), D295 (= D466)
- binding calcium ion: E173 (≠ D354), N250 (≠ V422), D295 (= D466)
- binding heme c: A101 (≠ F260), R102 (≠ Q261)
- binding pyrroloquinoline quinone: E59 (= E217), C105 (≠ T264), C106 (= C265), R111 (≠ Y270), T155 (= T336), G170 (≠ A351), A172 (≠ T353), E173 (≠ D354), T230 (≠ S403), W232 (= W404), K322 (= K493), N382 (≠ E591), W383 (= W592), W460 (≠ V701)
Sites not aligning to the query:
- binding heme c: 590, 591, 594, 595, 605, 606, 608, 611, 615, 619, 623, 631, 633, 636
- binding pyrroloquinoline quinone: 525
Q8GR64 Quinohemoprotein alcohol dehydrogenase ADH IIB; ADH IIB; Alcohol dehydrogenase (azurin); EC 1.1.9.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
28% identity, 77% coverage: 161:773/796 of query aligns to 33:543/690 of Q8GR64
- E81 (= E217) binding
- C127 (≠ T264) modified: Disulfide link with 128
- C128 (= C265) modified: Disulfide link with 127
- R133 (≠ Y270) binding
- T177 (= T336) binding
- GA 193:194 (≠ VT 352:353) binding
- E195 (≠ D354) binding
- T252 (≠ S403) binding
- N272 (≠ V422) binding
- D317 (= D466) binding
- K344 (= K493) binding
- NW 404:405 (≠ EW 591:592) binding
Sites not aligning to the query:
- 1:22 signal peptide
- 23:690 modified: mature protein, Quinohemoprotein alcohol dehydrogenase ADH IIB
- 547 binding
- 613 binding covalent
- 616 binding covalent
- 617 binding axial binding residue
- 655 binding axial binding residue
Q4W6G0 Quinohemoprotein alcohol dehydrogenase ADH-IIG; ADH IIG; Alcohol dehydrogenase (azurin); EC 1.1.9.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 2 papers)
28% identity, 83% coverage: 124:783/796 of query aligns to 14:577/718 of Q4W6G0
- C138 (≠ T264) modified: Disulfide link with 139
- C139 (= C265) modified: Disulfide link with 138
- R144 (≠ Y270) binding
- T189 (= T336) binding
- GA 205:206 (≠ VT 352:353) binding
- E207 (≠ D354) binding
- T264 (≠ N402) binding
- N284 (≠ T424) binding
- D329 (= D466) binding
- K356 (= K493) binding
- W415 (≠ L587) binding
- DW 419:420 (≠ EW 591:592) binding
Sites not aligning to the query:
- 1:29 signal peptide
- 30:718 modified: mature protein, Quinohemoprotein alcohol dehydrogenase ADH-IIG
- 635 binding covalent
- 638 binding covalent
- 639 binding axial binding residue
- 676 binding axial binding residue
1yiqA Molecular cloning and structural analysis of quinohemoprotein alcohol dehydrogenase adhiig from pseudomonas putida hk5. Compariison to the other quinohemoprotein alcohol dehydrogenase adhiib found in the same microorganism. (see paper)
28% identity, 81% coverage: 143:783/796 of query aligns to 4:548/684 of 1yiqA
- active site: E178 (≠ D354), N255 (≠ T424), D300 (= D466)
- binding calcium ion: E178 (≠ D354), N255 (≠ T424), D300 (= D466)
- binding pyrroloquinoline quinone: E63 (= E217), C109 (≠ T264), C110 (= C265), R115 (≠ Y270), T160 (= T336), G175 (≠ A351), G176 (≠ V352), A177 (≠ T353), E178 (≠ D354), T235 (≠ N402), W237 (= W404), K327 (= K493), D390 (≠ E591), W391 (= W592), F477 (= F705), A542 (≠ S777)
Sites not aligning to the query:
- binding heme c: 605, 606, 608, 609, 610, 623, 626, 630, 634, 637, 638, 642, 645, 646, 647, 648, 650
4aahA Methanol dehydrogenase from methylophilus w3a1 (see paper)
27% identity, 74% coverage: 178:768/796 of query aligns to 24:522/571 of 4aahA
- active site: E171 (≠ N355), N255 (≠ V422), D297 (= D466)
- binding calcium ion: E171 (≠ N355), N255 (≠ V422)
- binding pyrroloquinoline quinone: E55 (= E217), C103 (= C265), C104 (vs. gap), R109 (= R266), S168 (≠ V352), A170 (≠ D354), E171 (≠ N355), W237 (= W404), R324 (≠ K493), N387 (≠ E591), W467 (≠ L712)
Sites not aligning to the query:
2d0vA Crystal structure of methanol dehydrogenase from hyphomicrobium denitrificans (see paper)
26% identity, 76% coverage: 167:773/796 of query aligns to 13:536/597 of 2d0vA
- active site: E177 (≠ N355), N261 (≠ V422), D303 (= D466)
- binding calcium ion: E177 (≠ N355), N261 (≠ V422), D303 (= D466)
- binding pyrroloquinoline quinone: E55 (= E217), R109 (= R266), T159 (≠ P335), S174 (≠ V352), G175 (≠ T353), A176 (≠ D354), E177 (≠ N355), T241 (≠ N402), W243 (= W404), R331 (≠ K493), N394 (≠ E591), W476 (≠ L712)
Sites not aligning to the query:
7ce5A Methanol-pqq bound methanol dehydrogenase (mdh) from methylococcus capsulatus (bath) (see paper)
25% identity, 77% coverage: 165:773/796 of query aligns to 11:529/573 of 7ce5A
- active site: E177 (≠ N355), N261 (≠ V422), D303 (= D466)
- binding calcium ion: E177 (≠ N355), N261 (≠ V422), D303 (= D466)
- binding methanol: E177 (≠ N355)
- binding pyrroloquinoline quinone: E55 (= E217), C103 (= C265), C104 (vs. gap), R109 (= R266), T159 (≠ P330), A174 (≠ V352), G175 (≠ T353), A176 (≠ D354), E177 (≠ N355), T241 (≠ N402), W243 (= W404), R330 (≠ K493), N393 (≠ E591), W469 (≠ L712)
Sites not aligning to the query:
7cdlC Holo-methanol dehydrogenase (mdh) with cys131-cys132 reduced from methylococcus capsulatus (bath) (see paper)
25% identity, 77% coverage: 165:773/796 of query aligns to 11:529/573 of 7cdlC
- active site: E177 (≠ N355), N261 (≠ V422), D303 (= D466)
- binding calcium ion: E177 (≠ N355), N261 (≠ V422), D303 (= D466)
- binding pyrroloquinoline quinone: E55 (= E217), R109 (= R266), T159 (≠ P330), A174 (≠ V352), A176 (≠ D354), E177 (≠ N355), T241 (≠ N402), W243 (= W404), D303 (= D466), R330 (≠ K493), N393 (≠ E591), W469 (≠ L712)
Sites not aligning to the query:
1lrwA Crystal structure of methanol dehydrogenase from p. Denitrificans (see paper)
26% identity, 76% coverage: 167:773/796 of query aligns to 13:536/600 of 1lrwA
- active site: E177 (≠ N355), N261 (≠ V422), D303 (= D466)
- binding calcium ion: E177 (≠ N355), N261 (≠ V422), D303 (= D466)
- binding pyrroloquinoline quinone: E55 (= E217), C103 (= C265), C104 (vs. gap), R109 (= R266), T159 (≠ P335), S174 (≠ V352), G175 (≠ T353), A176 (≠ D354), E177 (≠ N355), T241 (vs. gap), W243 (= W404), R331 (≠ K493), W476 (≠ L712)
Sites not aligning to the query:
7o6zB Structure of a neodymium-containing, xoxf1-type methanol dehydrogenase (see paper)
25% identity, 77% coverage: 167:779/796 of query aligns to 13:547/588 of 7o6zB
- binding methanol: E173 (≠ N355), W263 (= W428), D314 (= D466)
- binding Neodymium Ion: E173 (≠ N355), N259 (≠ T424), D314 (= D466), D316 (= D468)
- binding pyrroloquinoline quinone: E55 (= E217), C105 (≠ T264), C106 (= C265), R111 (≠ Y270), T155 (≠ M325), G170 (≠ V352), G171 (≠ T353), D172 (= D354), E173 (≠ N355), W241 (= W404), D316 (= D468), R341 (≠ K493), D403 (≠ E591), W481 (≠ L712), G544 (= G776), W545 (≠ S777)
7o6zA Structure of a neodymium-containing, xoxf1-type methanol dehydrogenase (see paper)
25% identity, 77% coverage: 167:779/796 of query aligns to 13:547/588 of 7o6zA
6damA Crystal structure of lanthanide-dependent methanol dehydrogenase xoxf from methylomicrobium buryatense 5g (see paper)
29% identity, 43% coverage: 167:509/796 of query aligns to 13:344/563 of 6damA
- active site: E171 (≠ N355), N259 (≠ T424), D301 (= D466)
- binding pyrroloquinoline quinone: E55 (= E217), C103 (≠ T264), C104 (= C265), R109 (= R266), T153 (≠ P335), S168 (≠ V352), G169 (≠ T353), G170 (≠ D354), E171 (≠ N355), T239 (≠ N402), W241 (= W404), D303 (= D468), R328 (≠ K493)
Sites not aligning to the query:
5xm3A Crystal structure of methanol dehydrogenase from methylophaga aminisulfidivorans (see paper)
26% identity, 76% coverage: 167:773/796 of query aligns to 13:536/596 of 5xm3A
- active site: E177 (≠ N355), N261 (≠ V422), D303 (= D466)
- binding magnesium ion: E177 (≠ N355), N261 (≠ V422)
- binding pyrroloquinoline quinone: E55 (= E217), C103 (= C265), R109 (= R266), T159 (= T336), S174 (≠ V352), G175 (≠ T353), A176 (≠ D354), E177 (≠ N355), T241 (vs. gap), W243 (= W404), R331 (≠ K493), N394 (≠ E591), W476 (≠ L712)
Sites not aligning to the query:
8gy2A Cryo-em structure of membrane-bound alcohol dehydrogenase from gluconobacter oxydans
31% identity, 44% coverage: 166:512/796 of query aligns to 18:354/723 of 8gy2A
- binding calcium ion: E181 (≠ D354), N263 (≠ V422), D308 (= D466)
- binding heme c: D104 (= D257)
- binding pyrroloquinoline quinone: C107 (≠ F260), C108 (≠ Q261), D163 (≠ T336), G179 (≠ V352), A180 (≠ T353), E181 (≠ D354), W245 (vs. gap), N263 (≠ V422), D308 (= D466), K335 (= K493)
Sites not aligning to the query:
- binding heme c: 618, 619, 622, 623, 633, 634, 636, 639, 652, 660, 662, 665
- binding pyrroloquinoline quinone: 398, 489
P12293 Methanol dehydrogenase [cytochrome c] subunit 1; MDH large subunit alpha; MEDH; EC 1.1.2.7 from Paracoccus denitrificans (see 2 papers)
25% identity, 78% coverage: 151:773/796 of query aligns to 27:567/631 of P12293
- C135 (= C265) modified: Disulfide link with 136
- C136 (vs. gap) modified: Disulfide link with 135
- C418 (= C559) modified: Disulfide link with 447
- C447 (≠ A610) modified: Disulfide link with 418
Sites not aligning to the query:
O05542 Alcohol dehydrogenase (quinone), dehydrogenase subunit; ADH; Alcohol dehydrogenase (quinone), acceptor subunit; Alcohol dehydrogenase (quinone), subunit I; Ethanol:Q2 reductase; G3-ADH subunit I; Quinohemoprotein alcohol dehydrogenase; Quinohemoprotein-cytochrome c complex; Ubiquinol oxidase; EC 1.1.5.5 from Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans) (see paper)
31% identity, 44% coverage: 166:512/796 of query aligns to 52:388/757 of O05542
Sites not aligning to the query:
- 1:34 signal peptide
- 35 modified: Pyrrolidone carboxylic acid
1w6sC The high resolution structure of methanol dehydrogenase from methylobacterium extorquens (see paper)
25% identity, 77% coverage: 164:773/796 of query aligns to 10:536/596 of 1w6sC
- active site: E177 (≠ N355), N261 (≠ T424), D303 (= D466)
- binding calcium ion: E177 (≠ N355), N261 (≠ T424)
- binding pyrroloquinoline quinone: E55 (= E217), C103 (= C265), C104 (vs. gap), R109 (= R266), T159 (≠ P335), S174 (≠ V352), A176 (≠ D354), E177 (≠ N355), T241 (vs. gap), W243 (= W404), R331 (≠ K493), N394 (≠ E591), W476 (≠ L712)
Sites not aligning to the query:
P16027 Methanol dehydrogenase [cytochrome c] subunit 1; MDH large subunit alpha; MEDH; EC 1.1.2.7 from Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1) (Methylobacterium extorquens) (see 3 papers)
25% identity, 77% coverage: 164:773/796 of query aligns to 37:563/626 of P16027
- C130 (= C265) modified: Disulfide link with 131; mutation to S: Inactive.
- C131 (vs. gap) modified: Disulfide link with 130; mutation to S: Inactive.
- D330 (= D466) mutation to E: Lower affinity for methanol.
- C413 (= C559) modified: Disulfide link with 442
- C442 (≠ A610) modified: Disulfide link with 413
Sites not aligning to the query:
6fkwA Europium-containing methanol dehydrogenase (see paper)
27% identity, 44% coverage: 162:512/796 of query aligns to 8:345/576 of 6fkwA
- active site: E172 (≠ N355), N256 (≠ T424), D299 (= D466), D301 (= D468)
- binding europium ion: E172 (≠ N355), N256 (≠ T424), D299 (= D466), D301 (= D468)
- binding pyrroloquinoline quinone: E55 (= E217), C104 (≠ F260), C105 (≠ Q261), R110 (= R266), T154 (≠ P335), S169 (≠ V352), G170 (≠ T353), G171 (≠ D354), E172 (≠ N355), T236 (≠ N402), W238 (= W404), D301 (= D468), R326 (≠ K493)
Sites not aligning to the query:
4maeA Methanol dehydrogenase from methylacidiphilum fumariolicum solv (see paper)
27% identity, 44% coverage: 162:512/796 of query aligns to 8:345/577 of 4maeA
- active site: E172 (≠ N355), N256 (≠ T424), D299 (= D466)
- binding cerium (iii) ion: E172 (≠ N355), N256 (≠ T424), D299 (= D466), D301 (= D468)
- binding pyrroloquinoline quinone: E55 (= E217), C104 (≠ F260), C105 (≠ Q261), R110 (= R266), T154 (≠ P335), S169 (≠ V352), G170 (≠ T353), G171 (≠ D354), E172 (≠ N355), T236 (≠ N402), W238 (= W404), D301 (= D468), R326 (≠ K493)
Sites not aligning to the query:
Query Sequence
>BWI76_RS04950 FitnessBrowser__Koxy:BWI76_RS04950
MAETKSQQSRLLVTLTALFAAFCGLYLLAGGAWLVALGGSWYYPVAGLVMLAVTVLLFRG
KRSALWLYAALLLATMIWGVWEVGFDFWALTPRSDILVFFGIWLILPFVWRRLPIPSSGA
VAGLVVALLISGGILTWAGFNDPQEVNGTLSADATPAAPISEVADGDWSAYGRNQEGQRY
SPLKQINADNVKNLKEAWVFRTGDLKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALD
AATGKEKWHFDPQLNADPSFQHVTCRGVSYHEAKADNAPADVVADCPRRIILPVNDGRLF
AINAETGKLCESFANKGILNLQTNMPVTTPGMYEPTSPPIITDKTIVIAGAVTDNFSTRE
PSGVIRGFDVNTGKLLWAFDPGAKDPNAIPDDEHHFTLNSPNSWAPAAYDAKLDLVYLPM
GVTTPDIWGGNRTPEQERYASSIVALNATTGKLAWSYQTVHHDLWDMDMPSQPTLADIDV
NGKTVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVAKTQPFSDLSFRPK
KDLTGADMWGATMFDQLVCRVIFHQLRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPN
RQVAIANPMALPFVSKLIPRGPGNPMEQPKDAKGSGTEAGIQPQYGVPYGVTLNPFLSPF
GLPCKQPAWGYISALDLKTNEVVWKKRIGTPQDSLPFPMPVKLPFTMGMPMLGGPISTAG
NVLFIGATADNYLRAYNMSNGEKLWQARLPAGGQATPMTYEVNGKQYVVISAGGHGSFGT
KMGDYIVAYALPDDAK
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory