SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS05950 FitnessBrowser__Koxy:BWI76_RS05950 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
26% identity, 88% coverage: 5:225/250 of query aligns to 3:199/215 of 4ymtC

query
sites
4ymtC
L
 
V
D
 
D
W
 
F
H
 
L
G
 
S
V
 
M
L
 
V
S
 
K
G
 
Y
Q
 
T
P
 
P
L
 
L
Q
 
-
W
 
-
I
 
F
I
 
I
S
 
S
G
 
G
F
 
L
L
 
I
T
 
M
T
 
T
V
 
L
W
 
K
V
 
L
S
 
T
V
 
F
A
 
L
G
 
A
M
 
V
I
 
T
L
 
I
A
 
G
T
 
V
V
 
L
L
 
M
A
 
G
I
 
L
L
 
F
L
 
I
L
 
A
A
 
L
L
 
M
R
 
K
L
 
M
G
 
S
G
 
S
G
 
I
R
 
K
P
 
P
G
 
I
R
 
K
W
 
L
L
 
V
V
 
A
A
 
S
A
 
S
W
 
Y
V
 
I
S
 
E
L
 
V
F
 
I
R
 
R
N
 
G
T
 
T
P
|
P
L
|
L
L
 
L
V
 
V
Q
 
Q
L
 
L
L
 
L
F
 
L
W
 
I
Y
 
Y
F
 
-
A
 
-
A
 
-
W
 
N
N
 
G
L
 
L
L
 
M
P
 
Q
L
 
F
G
 
G
A
 
M
R
 
N
D
 
-
F
 
-
I
 
-
N
 
-
D
 
-
D
 
-
H
 
-
S
 
-
W
 
-
S
 
-
I
 
-
L
 
-
P
 
-
G
 
-
N
 
-
V
 
-
W
 
-
W
 
-
L
 
-
T
 
I
P
 
P
E
 
A
F
 
F
L
 
T
C
 
A
S
 
G
M
 
V
W
 
S
G
 
A
L
 
L
G
 
A
V
 
I
F
x
N
T
 
S
S
 
S
A
 
A
F
x
Y
L
 
V
I
 
A
E
 
E
E
 
I
I
 
I
A
 
R
S
 
A
G
 
G
L
 
I
R
 
Q
A
 
A
V
 
V
S
 
D
H
 
P
G
 
G
Q
 
Q
R
 
N
E
 
E
A
 
A
A
 
A
L
 
R
S
 
S
Q
 
L
G
 
G
F
 
M
T
 
T
P
 
H
W
 
A
Q
 
M
E
 
A
L
 
M
R
 
R
H
 
Y
I
 
V
L
 
I
L
 
I
P
 
P
Q
 
Q
G
 
A
L
 
I
A
 
K
N
 
N
A
 
I
W
 
L
Q
 
P
P
 
A
I
 
L
I
 
G
G
 
N
Q
x
E
Y
 
F
L
 
I
N
 
V
L
x
M
M
 
L
K
|
K
L
x
E
S
 
S
S
 
A
L
 
I
A
 
V
S
 
S
G
 
V
I
 
I
G
 
G
F
 
F
A
 
A
E
 
D
L
 
L
T
 
T
Y
 
R
Q
 
Q
V
 
A
R
 
D
Q
 
I
I
 
I
E
 
Q
S
 
S
Y
 
V
N
 
T
A
 
Y
H
 
R
A
 
Y
L
 
F
E
 
E
A
 
P
F
 
Y
A
 
I
V
 
I
G
 
I
T
 
A
A
 
A
L
 
I
Y
 
Y
L
 
F
A
 
V
L
 
M

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
26% identity, 88% coverage: 5:225/250 of query aligns to 3:199/214 of 4ymwC

query
sites
4ymwC
L
 
V
D
 
D
W
 
F
H
 
L
G
 
S
V
 
M
L
 
V
S
 
K
G
 
Y
Q
 
T
P
 
P
L
 
L
Q
 
-
W
 
-
I
 
F
I
 
I
S
 
S
G
 
G
F
 
L
L
 
I
T
 
M
T
 
T
V
 
L
W
 
K
V
 
L
S
 
T
V
 
F
A
 
L
G
 
A
M
 
V
I
 
T
L
 
I
A
 
G
T
 
V
V
 
L
L
 
M
A
 
G
I
 
L
L
 
F
L
 
I
L
 
A
A
 
L
L
 
M
R
 
K
L
 
M
G
 
S
G
 
S
G
 
I
R
 
K
P
 
P
G
 
I
R
 
K
W
 
L
L
 
V
V
 
A
A
 
S
A
 
S
W
 
Y
V
 
I
S
 
E
L
 
V
F
 
I
R
 
R
N
 
G
T
 
T
P
 
P
L
 
L
L
 
L
V
 
V
Q
 
Q
L
 
L
L
 
L
F
 
L
W
 
I
Y
 
Y
F
 
-
A
 
-
A
 
-
W
 
N
N
 
G
L
 
L
L
 
M
P
 
Q
L
 
F
G
 
G
A
 
M
R
 
N
D
 
-
F
 
-
I
 
-
N
 
-
D
 
-
D
 
-
H
 
-
S
 
-
W
 
-
S
 
-
I
 
-
L
 
-
P
 
-
G
 
-
N
 
-
V
 
-
W
 
-
W
 
-
L
 
-
T
 
I
P
 
P
E
 
A
F
 
F
L
 
T
C
 
A
S
 
G
M
 
V
W
 
S
G
 
A
L
 
L
G
 
A
V
 
I
F
x
N
T
 
S
S
 
S
A
 
A
F
x
Y
L
 
V
I
 
A
E
 
E
E
 
I
I
 
I
A
 
R
S
 
A
G
 
G
L
 
I
R
 
Q
A
 
A
V
 
V
S
 
D
H
 
P
G
 
G
Q
 
Q
R
 
N
E
 
E
A
 
A
A
 
A
L
 
R
S
 
S
Q
 
L
G
 
G
F
 
M
T
 
T
P
 
H
W
 
A
Q
 
M
E
 
A
L
 
M
R
 
R
H
 
Y
I
 
V
L
 
I
L
 
I
P
 
P
Q
 
Q
G
 
A
L
 
I
A
 
K
N
 
N
A
 
I
W
 
L
Q
 
P
P
 
A
I
 
L
I
 
G
G
 
N
Q
x
E
Y
 
F
L
 
I
N
 
V
L
 
M
M
 
L
K
 
K
L
x
E
S
 
S
S
 
A
L
 
I
A
 
V
S
 
S
G
 
V
I
 
I
G
 
G
F
 
F
A
 
A
E
 
D
L
 
L
T
 
T
Y
 
R
Q
 
Q
V
 
A
R
 
D
Q
 
I
I
 
I
E
 
Q
S
 
S
Y
 
V
N
 
T
A
 
Y
H
 
R
A
 
Y
L
 
F
E
 
E
A
 
P
F
 
Y
A
 
I
V
 
I
G
 
I
T
 
A
A
 
A
L
 
I
Y
 
Y
L
 
F
A
 
V
L
 
M

Query Sequence

>BWI76_RS05950 FitnessBrowser__Koxy:BWI76_RS05950
MIPHLDWHGVLSGQPLQWIISGFLTTVWVSVAGMILATVLAILLLALRLGGGRPGRWLVA
AWVSLFRNTPLLVQLLFWYFAAWNLLPLGARDFINDDHSWSILPGNVWWLTPEFLCSMWG
LGVFTSAFLIEEIASGLRAVSHGQREAALSQGFTPWQELRHILLPQGLANAWQPIIGQYL
NLMKLSSLASGIGFAELTYQVRQIESYNAHALEAFAVGTALYLALGVVMGVALTRLGPGR
NQQRRAGYER

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory