SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS07580 BWI76_RS07580 polar amino acid ABC transporter inner membrane subunit to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
37% identity, 95% coverage: 8:209/213 of query aligns to 14:215/215 of 4ymtC

query
sites
4ymtC
L
 
L
L
 
F
I
 
I
E
 
S
G
 
G
A
 
L
W
 
I
T
 
M
T
 
T
L
 
L
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K
I
 
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F
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L
A
 
A
I
 
V
A
 
T
F
 
I
G
 
G
V
 
V
A
 
L
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M
G
 
G
L
 
L
L
 
F
I
 
I
A
 
A
L
 
L
V
 
M
R
 
K
M
 
M
L
 
S
R
 
S
I
 
I
P
 
K
V
 
P
I
 
I
D
 
K
Q
 
L
L
 
V
L
 
A
V
 
S
V
 
S
Y
 
Y
I
 
I
S
 
E
L
 
V
A
 
I
R
 
R
A
 
G
T
 
T
P
|
P
L
|
L
V
 
L
T
 
V
L
 
Q
V
 
L
L
 
L
F
 
L
L
 
I
F
 
Y
L
 
N
S
 
G
L
 
L
P
 
M
T
 
Q
V
 
F
G
 
G
I
 
M
N
 
N
L
 
I
D
 
P
K
 
A
N
 
F
V
 
T
A
 
A
A
 
G
I
 
V
V
 
S
A
 
A
L
 
L
T
 
A
L
 
I
N
|
N
T
 
S
S
 
S
A
 
A
F
x
Y
N
 
V
A
 
A
E
 
E
I
 
I
W
 
I
R
 
R
N
 
A
A
 
G
F
 
I
R
 
Q
T
 
A
F
 
V
P
 
D
R
 
P
E
 
G
Q
 
Q
R
 
N
E
 
E
A
 
A
A
 
A
E
 
R
S
 
S
V
 
L
G
 
G
M
 
M
R
 
T
R
 
H
W
 
A
A
 
M
Y
 
A
F
 
M
R
 
R
Y
 
Y
I
 
V
M
 
I
L
 
I
P
 
P
Q
 
Q
M
 
A
W
 
I
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K
E
 
N
S
 
I
L
 
L
P
 
P
A
 
A
L
 
L
V
 
G
N
 
N
E
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E
M
 
F
S
 
I
F
 
V
L
x
M
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L
K
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K
G
x
E
S
 
S
P
 
A
A
 
I
I
 
V
A
 
S
V
 
V
I
 
I
G
 
G
V
 
F
V
 
A
D
 
D
L
 
L
T
 
T
R
 
R
V
 
Q
T
 
A
N
 
D
R
 
I
I
 
I
S
 
Q
S
 
S
V
 
V
T
 
T
Y
 
Y
E
 
R
P
 
Y
L
 
F
S
 
E
P
 
P
I
 
Y
L
 
I
A
 
I
A
 
I
G
 
A
L
 
A
L
 
I
Y
 
Y
V
 
F
V
 
V
I
 
M
I
 
T
G
 
L
L
 
T
L
 
F
L
 
S
K
 
K
L
 
L
Q
 
L
G
 
S
M
 
L
A
 
F
E
 
E
R
 
R
K
 
R
A
 
L
K
 
R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
37% identity, 94% coverage: 8:207/213 of query aligns to 14:213/214 of 4ymwC

query
sites
4ymwC
L
 
L
L
 
F
I
 
I
E
 
S
G
 
G
A
 
L
W
 
I
T
 
M
T
 
T
L
 
L
W
 
K
I
 
L
S
 
T
A
 
F
I
 
L
A
 
A
I
 
V
A
 
T
F
 
I
G
 
G
V
 
V
A
 
L
I
 
M
G
 
G
L
 
L
L
 
F
I
 
I
A
 
A
L
 
L
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M
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K
M
 
M
L
 
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I
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L
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I
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L
L
 
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L
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Y
L
 
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L
 
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A
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A
A
 
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A
 
A
L
 
L
T
 
A
L
 
I
N
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N
T
 
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S
 
S
A
 
A
F
x
Y
N
 
V
A
 
A
E
 
E
I
 
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I
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A
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I
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E
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A
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E
 
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G
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M
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T
R
 
H
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A
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M
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A
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M
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Y
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I
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P
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I
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S
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T
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Y
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Y
L
 
F
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E
P
 
P
I
 
Y
L
 
I
A
 
I
A
 
I
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A
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A
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I
Y
 
Y
V
 
F
V
 
V
I
 
M
I
 
T
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L
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T
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F
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S
K
 
K
L
 
L
Q
 
L
G
 
S
M
 
L
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F
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E
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R
K
 
R

Query Sequence

>BWI76_RS07580 BWI76_RS07580 polar amino acid ABC transporter inner membrane subunit
MDAISWQLLIEGAWTTLWISAIAIAFGVAIGLLIALVRMLRIPVIDQLLVVYISLARATP
LVTLVLFLFLSLPTVGINLDKNVAAIVALTLNTSAFNAEIWRNAFRTFPREQREAAESVG
MRRWAYFRYIMLPQMWIESLPALVNEMSFLIKGSPAIAVIGVVDLTRVTNRISSVTYEPL
SPILAAGLLYVVIIGLLLKLQGMAERKAKRLAR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory