Comparing BWI76_RS10275 FitnessBrowser__Koxy:BWI76_RS10275 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
55% identity, 95% coverage: 12:245/246 of query aligns to 7:240/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
50% identity, 97% coverage: 7:245/246 of query aligns to 1:242/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
50% identity, 97% coverage: 7:245/246 of query aligns to 1:242/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
50% identity, 97% coverage: 7:245/246 of query aligns to 1:242/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
50% identity, 97% coverage: 7:245/246 of query aligns to 1:242/242 of 2oljA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
48% identity, 98% coverage: 5:246/246 of query aligns to 1:241/241 of 4u00A
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
47% identity, 98% coverage: 1:241/246 of query aligns to 2:253/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
47% identity, 96% coverage: 7:241/246 of query aligns to 3:249/258 of 1b0uA
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
45% identity, 81% coverage: 21:219/246 of query aligns to 22:220/226 of 5xu1B
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
37% identity, 98% coverage: 6:246/246 of query aligns to 1:246/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
37% identity, 98% coverage: 6:246/246 of query aligns to 2:247/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
37% identity, 98% coverage: 6:246/246 of query aligns to 2:247/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
37% identity, 98% coverage: 6:246/246 of query aligns to 2:247/344 of 3tuiC
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
40% identity, 87% coverage: 6:220/246 of query aligns to 3:221/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
40% identity, 87% coverage: 6:220/246 of query aligns to 3:221/592 of 5lj7A
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
38% identity, 88% coverage: 5:220/246 of query aligns to 3:222/648 of P75831
8i6rB Cryo-em structure of pseudomonas aeruginosa ftse(e163q)x/envc complex with atp in peptidisc (see paper)
37% identity, 81% coverage: 22:220/246 of query aligns to 18:216/222 of 8i6rB
Sites not aligning to the query:
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
33% identity, 91% coverage: 6:228/246 of query aligns to 3:226/230 of 6z4wA
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
33% identity, 91% coverage: 6:228/246 of query aligns to 3:226/229 of 6z67B
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
38% identity, 87% coverage: 6:219/246 of query aligns to 1:223/232 of 1f3oA
>BWI76_RS10275 FitnessBrowser__Koxy:BWI76_RS10275
MSEKPLLEMIGIDKTFGRQTVLKNCSLEVQRGETVVLIGPSGSGKSTLLRCVNMLSPADS
GDVFFASQHISRGEVPVHKLRQRIGMVFQNYELFSHLTAAENIMLAPMTVLGMNRTDART
LADNLLAKVRINERADHFPDELSGGQQQRVAIARALAMKPELMLYDEPTSALDPEMIREV
LEVMAELSAEGMTSMVVTHEMGFARRAANKILFMEDGEIIDRASTSDFFAGNVSERAQRF
LTQILH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory