SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS10280 FitnessBrowser__Koxy:BWI76_RS10280 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
41% identity, 82% coverage: 1:198/241 of query aligns to 1:199/215 of 4ymtC

query
sites
4ymtC
M
 
M
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T
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V
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D
L
 
F
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L
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M
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K
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L
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I
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I
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M
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F
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L
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A
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V
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I
G
 
G
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L
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M
G
 
G
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L
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F
L
 
I
A
 
A
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L
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M
Q
 
K
E
 
M
A
 
S
P
 
S
F
 
I
R
 
K
A
 
P
G
 
I
K
 
K
G
 
L
L
 
V
A
 
A
F
 
S
F
 
S
Y
 
Y
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I
W
 
E
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V
F
 
I
R
 
R
G
 
G
T
 
T
P
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P
V
x
L
L
 
L
F
 
V
Q
 
Q
I
 
L
I
 
L
F
 
L
V
 
I
Y
 
Y
N
 
N
V
 
G
L
 
L
P
 
M
G
 
Q
F
 
F
G
 
G
L
 
M
R
 
N
F
 
I
S
 
P
A
 
A
F
 
F
T
 
T
C
 
A
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G
V
 
V
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A
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L
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A
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I
N
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A
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Y
M
 
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A
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E
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A
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A
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G
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N
T
 
E
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A
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A
M
 
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L
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M
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A
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A
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A
M
 
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G
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N
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E
M
 
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M
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M
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L
K
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K
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x
E
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S
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A
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P
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C
 
I
A
 
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A
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A
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I
Y
 
Y
Y
 
F
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V
L
 
M

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
41% identity, 82% coverage: 1:198/241 of query aligns to 1:199/214 of 4ymwC

query
sites
4ymwC
M
 
M
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M
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L
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Y
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I
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I
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I
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A
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A
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I
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Y
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F
L
 
V
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M

Query Sequence

>BWI76_RS10280 FitnessBrowser__Koxy:BWI76_RS10280
MSIELMWQYFLSPEFVQGAWMTLLITLCSLLCGVVLGLVLALLQEAPFRAGKGLAFFYLW
LFRGTPVLFQIIFVYNVLPGFGLRFSAFTCAVLALSLNEGAYMAEILRSGLQAVKSGQRT
AGMALGMTSGQIMRKIVLPQAARIVLPPMGNQMISMLKSSALVSVIAVQELLLVANQTAS
ASFRYFEALCAAGIYYLLLTSLFMVFQSWLESVLDPKQRRSKSQKRLNRLFKLPKPAREE
P

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory