SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS14440 FitnessBrowser__Koxy:BWI76_RS14440 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
34% identity, 94% coverage: 13:216/218 of query aligns to 13:215/215 of 4ymtC

query
sites
4ymtC
P
 
P
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L
L
 
F
L
 
I
Q
 
S
G
 
G
L
 
L
Q
 
I
L
 
M
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T
I
 
L
L
 
K
I
 
L
S
 
T
M
 
F
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L
G
 
A
L
 
V
A
 
T
G
 
I
G
 
G
F
 
V
I
 
L
I
 
M
G
 
G
L
 
L
L
 
F
A
 
I
G
 
A
V
 
L
C
 
M
R
 
K
A
 
M
L
 
S
G
 
S
G
 
I
G
 
K
I
 
P
A
 
I
K
 
K
T
 
L
L
 
V
S
 
A
L
 
S
I
 
S
F
 
Y
V
 
I
E
 
E
L
 
V
I
 
I
R
 
R
G
 
G
T
 
T
P
|
P
I
x
L
M
 
L
V
 
V
Q
 
Q
V
 
L
M
 
L
F
 
L
I
 
I
Y
 
Y
F
 
N
A
 
G
L
 
L
P
 
-
M
 
M
I
 
Q
L
 
F
P
 
G
V
 
M
R
 
N
I
 
I
D
 
P
P
 
A
I
 
F
T
 
T
A
 
A
A
 
G
M
 
V
V
 
S
T
 
A
I
 
L
I
 
A
I
 
I
N
|
N
S
 
S
G
 
S
A
 
A
Y
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Y
I
 
V
A
 
A
E
 
E
I
 
I
T
 
I
R
 
R
G
 
A
A
 
G
I
 
I
L
 
Q
S
 
A
I
 
V
N
 
D
R
 
P
G
 
G
F
 
Q
K
 
N
E
 
E
A
 
A
S
 
A
L
 
R
A
 
S
M
 
L
G
 
G
L
 
M
S
 
T
Q
 
H
R
 
A
A
 
M
T
 
A
L
 
M
W
 
R
H
 
Y
V
 
V
I
 
I
M
 
I
P
 
P
L
 
Q
A
 
A
L
 
I
R
 
K
R
 
N
M
 
I
I
 
L
P
 
P
A
 
A
L
 
L
G
 
G
N
 
N
Q
x
E
W
 
F
I
 
I
I
 
V
S
x
M
I
 
L
K
|
K
D
x
E
T
 
S
S
 
A
L
 
I
F
 
V
I
 
S
V
 
V
I
 
I
G
 
G
V
 
F
A
 
A
E
 
D
L
 
L
T
 
T
R
 
R
Q
 
Q
G
 
A
Q
 
D
E
 
I
I
 
I
I
 
Q
A
 
S
G
 
V
N
 
T
F
 
Y
R
 
R
A
 
Y
L
 
F
E
 
E
V
 
P
W
 
Y
T
 
I
A
 
I
V
 
I
A
 
A
L
 
A
I
 
I
Y
 
Y
L
 
F
A
 
V
V
 
M
T
 
T
L
 
L
C
 
T
L
 
F
S
 
S
F
 
K
L
 
L
L
 
L
K
 
S
Q
 
L
L
 
F
E
 
E
K
 
R
R
 
R
I
 
L
H
 
R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
34% identity, 93% coverage: 13:215/218 of query aligns to 13:214/214 of 4ymwC

query
sites
4ymwC
P
 
P
L
 
L
L
 
F
L
 
I
Q
 
S
G
 
G
L
 
L
Q
 
I
L
 
M
T
 
T
I
 
L
L
 
K
I
 
L
S
 
T
M
 
F
V
 
L
G
 
A
L
 
V
A
 
T
G
 
I
G
 
G
F
 
V
I
 
L
I
 
M
G
 
G
L
 
L
L
 
F
A
 
I
G
 
A
V
 
L
C
 
M
R
 
K
A
 
M
L
 
S
G
 
S
G
 
I
G
 
K
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P
A
 
I
K
 
K
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L
L
 
V
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A
L
 
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S
F
 
Y
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I
E
 
E
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V
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I
R
 
R
G
 
G
T
 
T
P
 
P
I
 
L
M
 
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Q
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L
M
 
L
F
 
L
I
 
I
Y
 
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A
 
G
L
 
L
P
 
-
M
 
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A
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T
 
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A
 
A
A
 
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M
 
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A
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L
I
 
A
I
 
I
N
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N
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S
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S
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A
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Y
I
 
V
A
 
A
E
 
E
I
 
I
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I
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A
A
 
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I
 
I
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A
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G
 
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E
 
E
A
 
A
S
 
A
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R
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S
M
 
L
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G
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M
S
 
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Q
 
H
R
 
A
A
 
M
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A
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M
W
 
R
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Y
V
 
V
I
 
I
M
 
I
P
 
P
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Q
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A
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I
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K
R
 
N
M
 
I
I
 
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P
 
P
A
 
A
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L
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G
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A
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L
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R
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A
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E
 
I
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I
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Q
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S
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V
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T
F
 
Y
R
 
R
A
 
Y
L
 
F
E
 
E
V
 
P
W
 
Y
T
 
I
A
 
I
V
 
I
A
 
A
L
 
A
I
 
I
Y
 
Y
L
 
F
A
 
V
V
 
M
T
 
T
L
 
L
C
 
T
L
 
F
S
 
S
F
 
K
L
 
L
L
 
L
K
 
S
Q
 
L
L
 
F
E
 
E
K
 
R
R
 
R
I
 
L

Query Sequence

>BWI76_RS14440 FitnessBrowser__Koxy:BWI76_RS14440
MNFETKYIWESLPLLLQGLQLTILISMVGLAGGFIIGLLAGVCRALGGGIAKTLSLIFVE
LIRGTPIMVQVMFIYFALPMILPVRIDPITAAMVTIIINSGAYIAEITRGAILSINRGFK
EASLAMGLSQRATLWHVIMPLALRRMIPALGNQWIISIKDTSLFIVIGVAELTRQGQEII
AGNFRALEVWTAVALIYLAVTLCLSFLLKQLEKRIHIL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory