Comparing BWI76_RS16700 FitnessBrowser__Koxy:BWI76_RS16700 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
35% identity, 98% coverage: 6:319/321 of query aligns to 4:317/326 of Q8RDH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
34% identity, 98% coverage: 6:319/321 of query aligns to 3:306/310 of 4fwiB
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
35% identity, 92% coverage: 26:319/321 of query aligns to 14:322/330 of P0AAH4
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
33% identity, 90% coverage: 22:311/321 of query aligns to 10:287/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
32% identity, 90% coverage: 22:311/321 of query aligns to 11:288/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
32% identity, 90% coverage: 22:311/321 of query aligns to 11:288/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
32% identity, 90% coverage: 22:311/321 of query aligns to 11:288/344 of 6cvlD
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
33% identity, 70% coverage: 36:260/321 of query aligns to 22:247/250 of 7z18I
Sites not aligning to the query:
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
33% identity, 70% coverage: 36:260/321 of query aligns to 22:247/253 of 7z15I
Sites not aligning to the query:
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
32% identity, 70% coverage: 36:260/321 of query aligns to 22:247/250 of 7z16I
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 73% coverage: 28:260/321 of query aligns to 12:239/240 of 4ymuJ
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
31% identity, 79% coverage: 6:260/321 of query aligns to 3:241/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
31% identity, 79% coverage: 6:260/321 of query aligns to 3:241/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
31% identity, 79% coverage: 6:260/321 of query aligns to 3:241/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
31% identity, 79% coverage: 6:260/321 of query aligns to 3:241/242 of 2oljA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
31% identity, 73% coverage: 28:260/321 of query aligns to 13:239/241 of 4u00A
Sites not aligning to the query:
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
30% identity, 79% coverage: 26:280/321 of query aligns to 14:264/353 of 1oxvD
Sites not aligning to the query:
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
30% identity, 79% coverage: 26:280/321 of query aligns to 14:264/353 of 1oxvA
Sites not aligning to the query:
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
30% identity, 79% coverage: 26:280/321 of query aligns to 14:264/353 of 1oxuA
Sites not aligning to the query:
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
30% identity, 79% coverage: 26:280/321 of query aligns to 14:264/353 of Q97UY8
>BWI76_RS16700 FitnessBrowser__Koxy:BWI76_RS16700
MSHEYIMEVDGLKKHFPLRDGLFGQQTGELRAVDGVSFKIRRGTIFGLVGESGSGKTTVG
RTLLGLYEKTAGSVKFRGQELSELSPRVMRVLRPKIQLVFQDPYSSLNPRIRIGDAIGEA
MLEHKLCRREELYDKTIDVMRICGLAPQHYHRFPHEFSGGQRQRIGIARALILNPDFIIA
DEPISALDVSIQAQIINLFSDLRDDHGVTFLFISHDLGVVEHLCDDVAVMYLGQLVETAG
RDALFSRPLHPYTQALLAAVPTLDPDSEPLAVVQGEIPDPSRPPAGCRFSSRCPQASDRC
RREIPLLREVADGHRVACHAV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory