SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS16800 BWI76_RS16800 amino acid ABC transporter permease to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
36% identity, 94% coverage: 11:248/254 of query aligns to 10:214/215 of 4ymtC

query
sites
4ymtC
E
 
K
Y
 
Y
G
 
T
P
 
P
L
 
L
F
 
F
M
 
I
D
 
S
G
 
G
A
 
L
L
 
I
M
 
M
T
 
T
I
 
L
K
 
K
C
 
L
T
 
T
I
 
F
I
 
L
C
 
A
V
 
V
I
 
T
L
 
I
G
 
G
T
 
V
L
 
L
W
 
M
G
 
G
L
 
L
T
 
F
L
 
I
G
 
A
L
 
L
G
 
M
R
 
K
M
 
M
A
 
S
K
 
S
A
 
I
E
 
K
H
 
P
G
 
-
V
 
-
W
 
-
K
 
-
Y
 
-
V
 
-
L
 
-
R
 
-
Y
 
-
L
 
-
V
 
I
Q
 
K
F
 
L
P
 
V
V
 
A
R
 
S
F
 
S
Y
 
Y
V
 
I
S
 
E
A
 
V
F
 
I
R
 
R
G
 
G
T
 
T
P
|
P
L
|
L
F
 
L
V
 
V
Q
 
Q
I
 
L
M
 
-
V
 
-
V
 
-
H
 
-
F
 
-
A
 
-
L
 
-
V
 
-
P
 
-
L
 
-
F
 
-
I
 
-
N
 
-
P
 
-
R
 
-
D
 
-
G
 
-
L
 
L
L
 
L
V
 
I
T
 
Y
S
 
N
G
 
G
M
 
L
M
 
M
S
 
-
A
 
-
D
 
-
F
 
-
A
 
-
R
 
-
E
 
Q
L
 
F
R
 
G
S
 
M
N
 
N
Y
 
I
G
 
P
A
 
A
F
 
F
L
 
T
S
 
A
C
 
G
I
 
V
V
 
S
A
 
A
I
 
L
T
 
A
L
 
I
N
|
N
A
 
S
G
 
S
A
 
A
Y
|
Y
V
 
V
S
 
A
E
 
E
I
 
I
F
 
I
R
 
R
A
 
A
G
 
G
I
 
I
Q
 
Q
S
 
A
I
 
V
D
 
D
K
 
P
G
 
G
Q
 
Q
M
 
N
E
 
E
A
 
A
S
 
A
R
 
R
A
 
S
L
 
L
G
 
G
M
 
M
P
 
T
W
 
H
W
 
A
K
 
M
T
 
A
M
 
M
R
 
R
Q
 
Y
V
 
V
I
 
I
L
 
I
P
 
P
Q
 
Q
A
 
A
F
 
I
R
 
K
R
 
N
I
 
I
L
 
L
P
 
P
P
 
A
L
 
L
G
 
G
N
 
N
N
x
E
A
 
F
I
 
I
A
 
V
I
x
M
V
 
L
K
|
K
D
x
E
S
 
S
S
 
A
L
 
I
A
 
V
S
 
S
A
 
V
I
 
I
G
 
G
L
 
F
A
 
A
D
 
D
L
 
L
A
 
T
Y
 
R
A
 
Q
A
 
A
R
 
D
T
 
I
V
 
I
S
 
Q
G
 
S
A
 
V
Y
 
T
A
 
Y
T
 
R
Y
 
Y
W
 
F
E
 
E
P
 
P
Y
 
Y
L
 
I
T
 
I
I
 
I
S
 
A
L
 
A
V
 
I
Y
 
Y
W
 
F
V
 
V
I
 
M
T
 
T
F
 
L
L
 
T
L
 
F
A
 
S
Q
 
K
L
 
L
V
 
L
N
 
S
R
 
L
L
 
F
E
 
E
K
 
R
R
 
R
F
 
L

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
36% identity, 94% coverage: 11:248/254 of query aligns to 10:214/214 of 4ymwC

query
sites
4ymwC
E
 
K
Y
 
Y
G
 
T
P
 
P
L
 
L
F
 
F
M
 
I
D
 
S
G
 
G
A
 
L
L
 
I
M
 
M
T
 
T
I
 
L
K
 
K
C
 
L
T
 
T
I
 
F
I
 
L
C
 
A
V
 
V
I
 
T
L
 
I
G
 
G
T
 
V
L
 
L
W
 
M
G
 
G
L
 
L
T
 
F
L
 
I
G
 
A
L
 
L
G
 
M
R
 
K
M
 
M
A
 
S
K
 
S
A
 
I
E
 
K
H
 
P
G
 
-
V
 
-
W
 
-
K
 
-
Y
 
-
V
 
-
L
 
-
R
 
-
Y
 
-
L
 
-
V
 
I
Q
 
K
F
 
L
P
 
V
V
 
A
R
 
S
F
 
S
Y
 
Y
V
 
I
S
 
E
A
 
V
F
 
I
R
 
R
G
 
G
T
 
T
P
 
P
L
 
L
F
 
L
V
 
V
Q
 
Q
I
 
L
M
 
-
V
 
-
V
 
-
H
 
-
F
 
-
A
 
-
L
 
-
V
 
-
P
 
-
L
 
-
F
 
-
I
 
-
N
 
-
P
 
-
R
 
-
D
 
-
G
 
-
L
 
L
L
 
L
V
 
I
T
 
Y
S
 
N
G
 
G
M
 
L
M
 
M
S
 
-
A
 
-
D
 
-
F
 
-
A
 
-
R
 
-
E
 
Q
L
 
F
R
 
G
S
 
M
N
 
N
Y
 
I
G
 
P
A
 
A
F
 
F
L
 
T
S
 
A
C
 
G
I
 
V
V
 
S
A
 
A
I
 
L
T
 
A
L
 
I
N
|
N
A
 
S
G
 
S
A
 
A
Y
|
Y
V
 
V
S
 
A
E
 
E
I
 
I
F
 
I
R
 
R
A
 
A
G
 
G
I
 
I
Q
 
Q
S
 
A
I
 
V
D
 
D
K
 
P
G
 
G
Q
 
Q
M
 
N
E
 
E
A
 
A
S
 
A
R
 
R
A
 
S
L
 
L
G
 
G
M
 
M
P
 
T
W
 
H
W
 
A
K
 
M
T
 
A
M
 
M
R
 
R
Q
 
Y
V
 
V
I
 
I
L
 
I
P
 
P
Q
 
Q
A
 
A
F
 
I
R
 
K
R
 
N
I
 
I
L
 
L
P
 
P
P
 
A
L
 
L
G
 
G
N
 
N
N
x
E
A
 
F
I
 
I
A
 
V
I
 
M
V
 
L
K
 
K
D
x
E
S
 
S
S
 
A
L
 
I
A
 
V
S
 
S
A
 
V
I
 
I
G
 
G
L
 
F
A
 
A
D
 
D
L
 
L
A
 
T
Y
 
R
A
 
Q
A
 
A
R
 
D
T
 
I
V
 
I
S
 
Q
G
 
S
A
 
V
Y
 
T
A
 
Y
T
 
R
Y
 
Y
W
 
F
E
 
E
P
 
P
Y
 
Y
L
 
I
T
 
I
I
 
I
S
 
A
L
 
A
V
 
I
Y
 
Y
W
 
F
V
 
V
I
 
M
T
 
T
F
 
L
L
 
T
L
 
F
A
 
S
Q
 
K
L
 
L
V
 
L
N
 
S
R
 
L
L
 
F
E
 
E
K
 
R
R
 
R
F
 
L

Query Sequence

>BWI76_RS16800 BWI76_RS16800 amino acid ABC transporter permease
MTGFRWEIIEEYGPLFMDGALMTIKCTIICVILGTLWGLTLGLGRMAKAEHGVWKYVLRY
LVQFPVRFYVSAFRGTPLFVQIMVVHFALVPLFINPRDGLLVTSGMMSADFARELRSNYG
AFLSCIVAITLNAGAYVSEIFRAGIQSIDKGQMEASRALGMPWWKTMRQVILPQAFRRIL
PPLGNNAIAIVKDSSLASAIGLADLAYAARTVSGAYATYWEPYLTISLVYWVITFLLAQL
VNRLEKRFGKSDSH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory