SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS16820 BWI76_RS16820 iron ABC transporter to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

5b57A Inward-facing conformation of abc heme importer bhuuv from burkholderia cenocepacia (see paper)
41% identity, 89% coverage: 40:349/350 of query aligns to 20:330/330 of 5b57A

query
sites
5b57A
L
 
M
A
 
S
L
 
V
F
 
V
G
 
A
L
 
L
T
 
C
R
 
V
G
 
G
S
 
A
F
 
Y
P
 
R
M
 
I
P
 
P
S
 
L
G
 
A
T
 
E
L
 
A
F
 
W
R
 
A
A
 
A
L
 
L
L
 
S
G
 
G
A
 
-
E
 
D
N
 
P
V
 
A
A
 
A
E
 
Q
Q
 
Q
P
 
A
R
 
R
F
 
A
I
 
V
L
 
L
F
x
L
D
|
D
I
 
I
R
 
R
L
 
A
P
 
P
R
 
R
L
 
V
L
 
V
M
 
L
A
 
A
L
 
L
L
|
L
C
 
V
G
 
G
A
 
G
M
 
G
L
 
F
G
 
G
L
 
A
A
 
T
G
 
G
A
 
A
A
 
A
M
 
M
Q
 
Q
S
 
A
I
 
L
T
 
F
R
 
R
N
 
N
G
 
P
L
 
L
A
 
A
D
 
D
P
 
P
G
 
G
L
 
L
I
 
V
G
 
G
V
 
V
K
 
S
E
 
S
G
 
G
A
 
A
S
 
A
I
 
L
V
 
G
V
 
A
L
 
T
A
 
T
L
 
L
V
 
I
L
 
V
F
 
L
F
 
G
P
 
P
A
 
A
V
 
S
G
 
A
V
 
A
I
 
A
W
 
L
R
 
P
P
 
-
L
 
V
A
 
A
G
 
A
M
 
F
L
 
A
G
 
G
G
 
G
V
 
L
L
 
A
V
 
V
A
 
A
L
 
A
L
 
L
V
 
V
L
 
Y
A
 
R
L
 
L
A
 
A
R
 
-
D
 
-
C
 
A
S
 
S
R
 
R
P
 
G
R
 
R
F
 
L
I
 
A
L
 
L
I
 
P
-
 
L
-
 
L
-
 
L
-
 
L
-
 
A
G
 
G
I
 
I
G
 
A
V
 
I
S
 
N
W
 
A
T
 
L
L
 
V
A
 
G
A
 
A
A
 
A
V
 
I
G
 
G
I
 
L
F
 
L
M
 
T
T
 
F
T
 
V
A
 
A
D
 
D
V
 
D
R
 
A
D
 
Q
V
 
L
Q
 
R
T
 
S
A
 
L
M
 
T
I
 
F
W
 
W
L
 
S
A
 
L
G
 
G
S
 
S
L
 
L
H
 
G
A
 
G
A
 
A
T
 
Q
W
|
W
P
 
P
L
 
T
L
 
L
A
|
A
-
 
A
V
 
V
A
|
A
F
 
P
C
 
C
W
 
V
A
|
A
L
 
L
P
 
-
G
 
G
A
 
G
M
 
V
I
 
L
L
 
L
F
 
V
L
 
R
T
 
E
A
 
R
R
 
D
A
 
A
A
 
L
D
 
N
A
 
A
A
 
L
L
 
Q
L
 
L
G
 
G
D
 
E
R
 
T
T
 
E
A
 
A
I
 
L
G
 
H
L
 
L
G
 
G
V
 
V
R
 
P
L
 
V
Q
 
Q
Q
 
R
L
 
L
T
 
K
L
 
R
L
 
R
R
 
V
F
 
L
F
 
V
A
 
A
P
 
V
V
 
A
L
 
L
L
 
A
T
 
V
S
 
G
A
 
A
S
 
L
V
 
V
S
 
S
C
 
C
V
 
A
G
 
G
S
 
I
L
 
I
G
 
G
F
 
F
V
 
I
G
 
G
L
 
L
M
 
V
A
 
A
P
 
P
H
 
H
M
 
C
A
 
V
R
 
R
F
 
L
L
 
A
L
 
C
R
 
G
G
 
P
G
 
D
Q
 
Q
V
 
R
A
 
I
L
 
V
L
 
L
C
 
P
G
 
G
S
 
A
A
 
A
L
 
L
I
 
L
G
 
G
A
 
A
L
 
L
L
 
L
V
 
T
L
 
L
A
 
A
T
 
A
D
 
D
T
 
L
I
 
A
G
 
A
R
 
R
L
 
T
A
 
V
F
 
A
A
 
A
P
 
P
L
 
A
Q
 
D
I
 
I
P
 
P
A
 
L
G
 
G
I
 
V
V
 
L
I
 
T
A
 
A
L
 
L
V
 
L
G
 
G
C
 
A
P
 
P
F
 
F
F
 
F
I
 
L
V
 
A
L
 
L
L
 
L
W
 
W
R
 
K
R
 
N
R
 
R
D
 
G
A
 
A

Query Sequence

>BWI76_RS16820 BWI76_RS16820 iron ABC transporter
MKSAARRAGFRPLACGGRHFLLRPAALKIAAGMLLVILLLALFGLTRGSFPMPSGTLFRA
LLGAENVAEQPRFILFDIRLPRLLMALLCGAMLGLAGAAMQSITRNGLADPGLIGVKEGA
SIVVLALVLFFPAVGVIWRPLAGMLGGVLVALLVLALARDCSRPRFILIGIGVSWTLAAA
VGIFMTTADVRDVQTAMIWLAGSLHAATWPLLAVAFCWALPGAMILFLTARAADAALLGD
RTAIGLGVRLQQLTLLRFFAPVLLTSASVSCVGSLGFVGLMAPHMARFLLRGGQVALLCG
SALIGALLVLATDTIGRLAFAPLQIPAGIVIALVGCPFFIVLLWRRRDAL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory