SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS16825 BWI76_RS16825 heme ABC transporter to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

5b57A Inward-facing conformation of abc heme importer bhuuv from burkholderia cenocepacia (see paper)
37% identity, 94% coverage: 13:333/341 of query aligns to 2:321/330 of 5b57A

query
sites
5b57A
S
 
S
R
 
R
P
 
R
R
 
F
L
 
A
A
 
P
L
 
F
V
 
V
L
 
L
L
 
A
S
 
A
L
 
L
L
 
A
L
 
I
L
 
L
G
 
M
G
 
G
-
 
A
-
 
M
S
 
S
L
 
V
V
 
V
H
 
A
L
 
L
G
 
C
L
 
V
G
 
G
A
 
A
R
 
Y
W
 
R
I
 
I
A
 
-
P
 
P
Q
 
L
T
 
A
V
 
E
L
 
A
Q
 
W
A
 
A
L
 
A
F
 
L
H
 
S
Y
 
G
D
 
D
P
 
P
R
 
A
N
 
A
F
 
Q
D
 
Q
H
 
A
R
 
R
-
 
A
I
 
V
I
 
L
V
x
L
D
|
D
L
 
I
R
 
R
L
 
A
V
 
P
R
 
R
L
 
V
A
 
V
A
 
L
A
 
A
L
 
L
L
|
L
T
 
V
G
 
G
A
 
G
A
 
G
L
 
F
G
 
G
V
 
A
A
 
T
G
 
G
L
 
A
L
 
A
L
 
M
Q
 
Q
T
 
A
V
 
L
I
 
F
R
 
R
N
 
N
P
 
P
L
 
L
G
 
A
E
 
D
P
 
P
H
 
G
I
 
L
L
 
V
G
 
G
L
 
V
N
 
S
A
 
S
G
 
G
A
 
A
S
 
A
L
 
L
A
 
G
V
 
A
V
 
T
A
 
T
T
 
L
S
 
-
A
 
-
L
 
-
G
 
-
I
 
I
S
 
V
L
 
L
G
 
G
G
 
P
V
 
A
A
 
S
L
 
A
A
 
A
R
 
A
P
 
L
L
 
P
T
 
V
A
 
A
A
 
A
C
 
F
G
 
A
A
 
G
A
 
G
L
 
L
L
 
A
F
 
V
G
 
A
G
 
A
V
 
L
M
 
V
L
 
Y
L
 
R
S
 
L
S
 
A
S
 
A
G
 
S
R
 
R
G
 
G
G
 
R
V
 
L
T
 
A
P
 
L
L
 
P
R
 
L
I
 
L
T
 
L
L
 
L
C
 
A
G
 
G
V
 
I
A
 
A
L
 
I
S
 
N
A
 
A
F
 
L
-
 
V
A
 
G
S
 
A
A
 
A
V
 
I
T
 
G
A
 
L
A
 
L
I
 
T
L
 
F
I
 
V
L
 
A
D
 
D
E
 
D
Q
 
A
T
 
Q
L
 
L
L
 
R
A
 
S
M
 
L
R
 
T
T
 
F
W
 
W
L
 
S
A
 
L
G
 
G
D
 
S
L
 
L
A
 
G
G
 
G
L
 
A
N
 
Q
W
|
W
Q
 
P
T
 
T
L
 
L
R
 
-
A
|
A
A
 
A
L
 
V
L
x
A
P
 
P
-
 
C
-
 
V
A
|
A
L
 
L
A
 
G
G
 
G
V
 
V
T
 
-
V
 
-
A
 
-
L
 
L
A
 
L
I
 
V
A
 
R
P
 
E
R
 
R
-
 
D
-
 
A
L
 
L
N
 
N
V
 
A
L
 
L
A
 
Q
L
 
L
G
 
G
D
 
E
K
 
T
V
 
E
A
 
A
L
 
L
G
 
H
L
 
L
G
 
G
V
 
V
K
 
P
I
 
V
V
 
Q
Q
 
R
T
 
L
R
 
K
L
 
R
L
 
R
G
 
V
L
 
L
A
 
V
A
 
A
I
 
V
A
 
A
L
 
L
L
 
A
C
 
V
G
 
G
S
 
A
A
 
L
V
 
V
A
 
S
V
 
C
A
 
A
G
 
G
P
 
I
I
 
I
G
 
G
F
 
F
V
 
I
G
 
G
L
 
L
V
 
V
V
 
A
P
 
P
H
 
H
A
 
C
V
 
V
R
 
R
R
 
L
L
 
A
I
 
C
S
 
G
E
 
P
D
 
D
I
 
Q
R
 
R
L
 
I
A
 
V
L
 
L
P
 
P
L
 
G
A
 
A
A
 
A
P
 
L
V
 
L
G
 
G
A
 
A
L
 
L
V
 
L
L
 
T
L
 
L
L
 
A
A
 
A
D
 
D
I
 
L
A
 
A
A
 
A
R
 
R
T
 
T
L
 
V
V
 
A
A
 
A
P
 
P
Q
 
A
E
 
D
L
 
I
A
 
P
T
 
L
G
 
G
A
 
V
M
 
L
T
 
T
A
 
A
L
 
L
V
 
L
G
 
G
A
 
A
P
 
P
V
 
F
F
 
F
I
 
L

Query Sequence

>BWI76_RS16825 BWI76_RS16825 heme ABC transporter
MSASALLLPRRQSRPRLALVLLSLLLLGGSLVHLGLGARWIAPQTVLQALFHYDPRNFDH
RIIVDLRLVRLAAALLTGAALGVAGLLLQTVIRNPLGEPHILGLNAGASLAVVATSALGI
SLGGVALARPLTAACGAALLFGGVMLLSSSGRGGVTPLRITLCGVALSAFASAVTAAILI
LDEQTLLAMRTWLAGDLAGLNWQTLRAALLPALAGVTVALAIAPRLNVLALGDKVALGLG
VKIVQTRLLGLAAIALLCGSAVAVAGPIGFVGLVVPHAVRRLISEDIRLALPLAAPVGAL
VLLLADIAARTLVAPQELATGAMTALVGAPVFIFIAARFFK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory