SitesBLAST
Comparing BWI76_RS17735 FitnessBrowser__Koxy:BWI76_RS17735 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
7cyxA Crystal strcuture of glycine oxidase from bacillus cereus atcc 14579 (see paper)
25% identity, 95% coverage: 3:414/432 of query aligns to 4:360/363 of 7cyxA
- binding flavin-adenine dinucleotide: I7 (≠ L6), G8 (= G7), G10 (= G9), V11 (= V10), I12 (≠ V11), V30 (≠ I29), E31 (≠ D30), K32 (≠ R31), E38 (= E38), A39 (≠ T39), S40 (= S40), A43 (≠ N43), G45 (= G45), L46 (≠ Q46), V171 (= V224), G200 (≠ F253), G201 (= G254), W203 (≠ Y256), G298 (= G353), R300 (= R355), P301 (= P356), Y326 (≠ G380), R327 (≠ T381), N328 (≠ L382), G329 (= G383), I330 (≠ W384)
Q8GAI3 4-methylaminobutanoate oxidase (formaldehyde-forming); MABO; Demethylating gamma-N-methylaminobutyrate oxidase; Gamma-N-methylaminobutyrate oxidase 1; EC 1.5.3.19 from Paenarthrobacter nicotinovorans (Arthrobacter nicotinovorans) (see paper)
25% identity, 98% coverage: 1:425/432 of query aligns to 26:415/824 of Q8GAI3
- W66 (= W55) mutation W->F,S: Contains a non-covalently bound FAD. Loss of enzyme activity.
- H67 (≠ A56) mutation to A: Contains a non-covalently bound FAD. Exhibits about 10% of the wild-type enzyme activity.
1y56B Crystal structure of l-proline dehydrogenase from p.Horikoshii (see paper)
25% identity, 73% coverage: 104:418/432 of query aligns to 55:371/374 of 1y56B
- active site: H224 (≠ G274), P239 (= P288), G305 (= G353), M338 (≠ T385)
- binding flavin-adenine dinucleotide: E170 (≠ P223), V171 (= V224), T200 (≠ F253), N201 (≠ G254), W203 (≠ Y256), G305 (= G353), Y306 (≠ L354), Y307 (≠ R355), G334 (≠ T381), H335 (≠ L382), G336 (= G383), F337 (≠ W384), M338 (≠ T385)
- binding flavin mononucleotide: I260 (≠ G311), R301 (≠ T349), W303 (= W351)
Sites not aligning to the query:
- active site: 44, 47, 48
- binding flavin-adenine dinucleotide: 11, 13, 14, 15, 33, 34, 35, 42, 43, 45, 46, 47, 49
- binding flavin mononucleotide: 44, 45
S5FMM4 Glycine oxidase; GO; BliGO; EC 1.4.3.19 from Bacillus licheniformis (see paper)
25% identity, 67% coverage: 113:400/432 of query aligns to 64:348/369 of S5FMM4
- K81 (≠ R123) mutation to R: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-54, C-202, V-332 and V-342.
- S202 (≠ F253) mutation to C: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-54, R-81, V-332 and V-342.
- I332 (≠ W384) mutation to V: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-54, R-81, C-202 and V-342.
- M342 (≠ I394) mutation to V: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-54, R-81, C-202 and V-332.
Sites not aligning to the query:
- 51 G→S: Shows 4.3- and 107-fold increase of affinity to glyphosate and glycine, respectively. Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with R-54, R-81, C-202, V-332 and V-342.
- 54 A→R: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-81, C-202, V-332 and V-342.
4yshA Crystal structure of glycine oxidase from geobacillus kaustophilus
24% identity, 71% coverage: 108:415/432 of query aligns to 61:368/370 of 4yshA
- active site: I262 (≠ V310), L283 (= L331), G305 (= G353), N335 (≠ L382), L338 (≠ T385)
- binding flavin-adenine dinucleotide: V178 (≠ P223), S206 (≠ F253), G207 (= G254), W209 (≠ Y256), R307 (= R355), H332 (= H379), R334 (≠ T381), N335 (≠ L382), G336 (= G383), I337 (≠ W384)
Sites not aligning to the query:
- active site: 45, 48, 49, 52
- binding flavin-adenine dinucleotide: 10, 12, 14, 32, 33, 34, 40, 41, 42, 45, 46, 47, 48
4yshB Crystal structure of glycine oxidase from geobacillus kaustophilus
24% identity, 71% coverage: 108:415/432 of query aligns to 61:368/368 of 4yshB
- active site: I262 (≠ V310), L283 (= L331), G305 (= G353), N335 (≠ L382), L338 (≠ T385)
- binding flavin-adenine dinucleotide: V178 (≠ P223), S206 (≠ F253), W209 (≠ Y256), R307 (= R355), H332 (= H379), R334 (≠ T381), N335 (≠ L382), G336 (= G383), I337 (≠ W384), L338 (≠ T385)
- binding glycine: G249 (≠ Y297), Y251 (≠ I299), Y251 (≠ I299), A264 (≠ G312), R307 (= R355), R334 (≠ T381), R334 (≠ T381)
Sites not aligning to the query:
- active site: 45, 48, 49, 52
- binding flavin-adenine dinucleotide: 9, 10, 12, 14, 32, 33, 34, 40, 41, 42, 45, 46, 48
Q5L2C2 Glycine oxidase; GO; GOX; GOXK; EC 1.4.3.19 from Geobacillus kaustophilus (strain HTA426)
23% identity, 71% coverage: 108:415/432 of query aligns to 62:370/377 of Q5L2C2
- V180 (≠ P223) binding
- R309 (= R355) binding
- 334:340 (vs. 379:385, 29% identical) binding
- R336 (≠ T381) binding
Sites not aligning to the query:
- 14:15 binding
- 34:35 binding
- 42:43 binding
- 47:49 binding
6j39A Crystal structure of cmis2 with inhibitor (see paper)
25% identity, 91% coverage: 11:405/432 of query aligns to 11:359/368 of 6j39A
- binding (3R)-3-[(carboxymethyl)sulfanyl]nonanoic acid: M44 (≠ Q46), P46 (≠ S48), N49 (≠ I65), R243 (≠ I279), Y252 (≠ P288), Y267 (vs. gap), R308 (= R355), R334 (≠ T381), I335 (≠ L382)
- binding flavin-adenine dinucleotide: I11 (≠ V11), V29 (≠ I29), D30 (= D30), P31 (= P33), E32 (≠ G34), K36 (≠ E38), A37 (≠ T39), S38 (= S40), V40 (≠ A42), S41 (≠ N43), A42 (= A44), G43 (= G45), M44 (≠ Q46), A174 (≠ P223), A203 (≠ F253), W206 (≠ Y256), I228 (≠ S276), Y252 (≠ P288), R308 (= R355), S333 (≠ G380), R334 (≠ T381), I335 (≠ L382), G336 (= G383), V337 (≠ W384), Q338 (≠ T385)
Sites not aligning to the query:
6j38A Crystal structure of cmis2 (see paper)
25% identity, 91% coverage: 11:405/432 of query aligns to 11:359/368 of 6j38A
- binding flavin-adenine dinucleotide: I11 (≠ V11), V29 (≠ I29), D30 (= D30), P31 (= P33), K36 (≠ E38), A37 (≠ T39), S38 (= S40), S41 (≠ N43), A42 (= A44), G43 (= G45), M44 (≠ Q46), A174 (≠ P223), A203 (≠ F253), W206 (≠ Y256), G226 (= G274), G306 (= G353), R308 (= R355), S333 (≠ G380), R334 (≠ T381), I335 (≠ L382), G336 (= G383), V337 (≠ W384), Q338 (≠ T385)
Sites not aligning to the query:
4pabB Crystal structure of the precursor form of rat dmgdh complexed with tetrahydrofolate (see paper)
24% identity, 99% coverage: 4:432/432 of query aligns to 9:409/824 of 4pabB
- active site: T53 (≠ S48), E102 (≠ N149), H226 (≠ G274), Y255 (≠ K298)
- binding flavin-adenine dinucleotide: I11 (≠ L6), G12 (= G7), G14 (= G9), C15 (≠ V10), V16 (= V11), L35 (≠ I29), E36 (≠ D30), K37 (≠ R31), G43 (≠ E37), S44 (≠ E38), T45 (= T39), H47 (≠ A41), A48 (= A42), A49 (= A44), G50 (= G45), L51 (≠ Q46), V175 (= V224), A204 (≠ F253), G205 (= G254), W207 (≠ Y256), H226 (≠ G274), Y228 (= Y275), G326 (= G353), I328 (≠ R355), F353 (≠ H379), Y355 (≠ L382), G356 (= G383), I357 (≠ W384), I358 (≠ T385)
Sites not aligning to the query:
- active site: 536
- binding (6s)-5,6,7,8-tetrahydrofolate: 523, 536, 538, 550, 612, 613, 632, 639, 680, 700
Q63342 Dimethylglycine dehydrogenase, mitochondrial; ME2GLYDH; EC 1.5.8.4 from Rattus norvegicus (Rat) (see 2 papers)
24% identity, 99% coverage: 4:432/432 of query aligns to 46:446/857 of Q63342
- CV 52:53 (≠ VV 10:11) binding
- EK 73:74 (≠ DR 30:31) binding
- 80:88 (vs. 37:46, 40% identical) binding
- H84 (≠ A41) modified: Tele-8alpha-FAD histidine
- V212 (= V224) binding
- W244 (≠ Y256) binding
- FG-YGII 390:395 (≠ HGTLGWT 379:385) binding
Sites not aligning to the query:
- 573:575 binding
- 669 binding
- 676:678 binding
- 737 binding
1vrqB Crystal structure of heterotetrameric sarcosine oxidase from corynebacterium sp. U-96 in complex with folinic acid (see paper)
22% identity, 66% coverage: 134:418/432 of query aligns to 103:391/402 of 1vrqB
- active site: G326 (= G353), K358 (≠ T385)
- binding n,n-dimethylglycine: K358 (≠ T385)
- binding flavin-adenine dinucleotide: V196 (= V224), A224 (= A252), G225 (= G254), H228 (≠ S257), L247 (= L277), G353 (= G380), T354 (= T381), G355 (≠ L382), G356 (= G383), F357 (≠ W384), K358 (≠ T385)
- binding flavin mononucleotide: H172 (≠ C200), V251 (≠ I281), E279 (≠ R307), R322 (≠ T349), W324 (= W351)
Sites not aligning to the query:
- active site: 62, 65, 66
- binding n,n-dimethylglycine: 65, 67, 69, 401
- binding flavin-adenine dinucleotide: 26, 27, 29, 30, 31, 51, 52, 53, 59, 60, 61, 63, 64, 65, 67
- binding flavin mononucleotide: 62, 63
2gagB Heteroteterameric sarcosine: structure of a diflavin metaloenzyme at 1.85 a resolution (see paper)
21% identity, 71% coverage: 111:418/432 of query aligns to 79:390/403 of 2gagB
- binding flavin-adenine dinucleotide: V195 (= V224), G224 (≠ F253), A225 (≠ G254), H227 (≠ Y256), L231 (≠ M260), L246 (= L272), G352 (= G380), T353 (= T381), G354 (≠ L382), G355 (= G383), F356 (≠ W384), K357 (≠ T385)
- binding flavin mononucleotide: H171 (≠ C200), V250 (≠ A282), E278 (≠ I308), R321 (≠ T349), W323 (= W351)
- binding 2-furoic acid: M263 (≠ L293), Y270 (≠ A300), K357 (≠ T385)
- binding sulfite ion: K170 (≠ D199), K276 (≠ R306)
Sites not aligning to the query:
- active site: 61, 64, 65
- binding flavin-adenine dinucleotide: 26, 28, 29, 30, 51, 52, 58, 59, 60, 62, 63, 64, 66
- binding flavin mononucleotide: 61, 62
- binding 2-furoic acid: 64, 66, 68, 401
3ad8B Heterotetrameric sarcosine oxidase from corynebacterium sp. U-96 in complex with pyrrole 2-carboxylate (see paper)
22% identity, 66% coverage: 134:418/432 of query aligns to 103:391/404 of 3ad8B
- active site: G326 (= G353), K358 (≠ T385)
- binding flavin-adenine dinucleotide: V196 (= V224), G225 (= G254), A226 (≠ S255), H228 (≠ S257), L247 (= L277), G353 (= G380), T354 (= T381), G355 (≠ L382), G356 (= G383), F357 (≠ W384), K358 (≠ T385)
- binding flavin mononucleotide: H172 (≠ C200), V251 (≠ I281), E279 (≠ R307), R322 (≠ T349), W324 (= W351)
- binding pyrrole-2-carboxylate: M264 (≠ I292), Y271 (≠ I299), T354 (= T381), K358 (≠ T385)
Sites not aligning to the query:
- active site: 62, 65, 66
- binding flavin-adenine dinucleotide: 26, 27, 29, 30, 31, 52, 53, 59, 60, 61, 63, 64, 65, 67
- binding flavin mononucleotide: 62, 63
- binding pyrrole-2-carboxylate: 65, 67, 69, 402
3ad7B Heterotetrameric sarcosine oxidase from corynebacterium sp. U-96 in complex with methylthio acetate (see paper)
22% identity, 66% coverage: 134:418/432 of query aligns to 103:391/404 of 3ad7B
- active site: G326 (= G353), K358 (≠ T385)
- binding flavin-adenine dinucleotide: V196 (= V224), G225 (= G254), A226 (≠ S255), H228 (≠ S257), L247 (= L277), G353 (= G380), T354 (= T381), G355 (≠ L382), G356 (= G383), F357 (≠ W384), K358 (≠ T385)
- binding flavin mononucleotide: H172 (≠ C200), V251 (≠ I281), K277 (≠ D305), E279 (≠ R307), R322 (≠ T349), W324 (= W351)
- binding [methylthio]acetate: M264 (≠ I292), Y271 (≠ I299), T354 (= T381), K358 (≠ T385)
Sites not aligning to the query:
- active site: 62, 65, 66
- binding flavin-adenine dinucleotide: 26, 27, 29, 30, 31, 52, 53, 59, 60, 61, 63, 64, 65, 67
- binding flavin mononucleotide: 62, 63
- binding [methylthio]acetate: 67, 69, 402
Q50LF2 Sarcosine oxidase subunit beta; Sarcosine oxidase subunit B; Sarcosine oxidase (5,10-methylenetetrahydrofolate-forming) subunit beta; Tetrameric sarcosine oxidase subunit beta; TSOX subunit beta; EC 1.5.3.24 from Corynebacterium sp. (strain U-96) (see 4 papers)
22% identity, 66% coverage: 134:418/432 of query aligns to 104:392/405 of Q50LF2
- K172 (≠ D199) mutation to A: Retains 39% of wild-type activity.; mutation to D: Retains 32% of wild-type activity.; mutation to R: Retains 58% of wild-type activity.
- H173 (≠ C200) modified: Tele-8alpha-FMN histidine
- V197 (= V224) binding
- H270 (≠ Y297) mutation to A: 10-fold decrease in catalytic efficiency.
- Y272 (≠ I299) mutation to A: 13000-fold decrease in catalytic efficiency.; mutation to F: 130-fold decrease in catalytic efficiency.
- G354 (= G380) binding
- G357 (= G383) binding
- K359 (≠ T385) binding ; mutation K->A,D: Loss of activity.; mutation to R: Retains 0.07% of wild-type activity. Shows higher apparent KM for sarcosine.
Sites not aligning to the query:
- 31 binding
- 32 binding
- 53 binding
- 61 binding
- 62 binding
- 66 binding
- 68 binding
P40875 Sarcosine oxidase subunit beta; Sarcosine oxidase subunit B; Sarcosine oxidase (5,10-methylenetetrahydrofolate-forming) subunit beta; Tetrameric sarcosine oxidase subunit beta; TSOX subunit beta; EC 1.5.3.24 from Corynebacterium sp. (strain P-1) (see 3 papers)
22% identity, 67% coverage: 111:399/432 of query aligns to 81:373/405 of P40875
- C146 (≠ E176) mutation to S: No change in activity.
- H173 (≠ C200) modified: Tele-8alpha-FMN histidine; mutation to N: Prevents covalent attachment of FMN. Loss of activity. The mutant is considerably less stable than wild-type enzyme, the beta and delta subunits are lost during purification, which yields a stable alpha-gamma complex.
- H175 (≠ L202) mutation to A: No effect on FMN binding and activity.
- C195 (≠ T222) mutation to S: No change in activity.
- C351 (≠ T377) mutation to A: No change in activity.
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 30 G→A: Prevents covalent attachment of FMN. Blocks subunit assembly.
O31616 Glycine oxidase; GO; EC 1.4.3.19 from Bacillus subtilis (strain 168) (see 3 papers)
24% identity, 53% coverage: 171:401/432 of query aligns to 124:349/369 of O31616
- V174 (= V224) binding
- H244 (≠ Y297) mutation to A: 2-fold decrease in catalytic efficiency on glycine and similar catalytic efficiency on glyphosate. 60-fold decrease in catalytic efficiency on glycine and 210-fold increase in that on glyphosate; when associated with S-51 and R-54.
- R302 (= R355) binding
- 327:333 (vs. 379:385, 29% identical) binding
- R329 (≠ T381) binding
Sites not aligning to the query:
- 14:15 binding
- 34:35 binding
- 42:43 binding
- 47:49 binding
- 51 G→R: 130-fold decrease in catalytic efficiency on glycine and 28-fold increase in that on glyphosate.; G→S: 60-fold decrease in catalytic efficiency on glycine and 210-fold increase in that on glyphosate; when associated with R-54 and A-244.
- 54 A→R: 20-fold decrease in catalytic efficiency on glycine and 34-fold increase in that on glyphosate. 60-fold decrease in catalytic efficiency on glycine and 210-fold increase in that on glyphosate; when associated with S-51 and A-244.
1ng3A Complex of thio (glycine oxidase) with acetyl-glycine (see paper)
24% identity, 53% coverage: 171:401/432 of query aligns to 124:349/364 of 1ng3A
- binding acetylamino-acetic acid: Y246 (≠ I299), R302 (= R355), R329 (≠ T381)
- binding flavin-adenine dinucleotide: V174 (= V224), S202 (≠ F253), G203 (= G254), W205 (≠ Y256), F209 (≠ M260), G300 (= G353), R302 (= R355), H327 (= H379), R329 (≠ T381), N330 (≠ L382), G331 (= G383), I332 (≠ W384)
- binding phosphate ion: R254 (= R307)
Sites not aligning to the query:
- active site: 47, 48, 49
- binding flavin-adenine dinucleotide: 11, 13, 15, 33, 34, 35, 41, 42, 43, 46, 47, 48, 49
- binding phosphate ion: 89
3if9A Crystal structure of glycine oxidase g51s/a54r/h244a mutant in complex with inhibitor glycolate (see paper)
25% identity, 53% coverage: 172:401/432 of query aligns to 125:349/364 of 3if9A
- binding flavin-adenine dinucleotide: P173 (= P223), V174 (= V224), S202 (≠ F253), G203 (= G254), W205 (≠ Y256), F209 (≠ M260), G300 (= G353), R302 (= R355), H327 (= H379), F328 (≠ G380), R329 (≠ T381), N330 (≠ L382), G331 (= G383), I332 (≠ W384)
- binding glycolic acid: Y246 (≠ I299), R302 (= R355), R329 (≠ T381)
Sites not aligning to the query:
- active site: 47, 48, 49
- binding flavin-adenine dinucleotide: 11, 13, 15, 34, 35, 42, 43, 46, 47, 48, 49
Query Sequence
>BWI76_RS17735 FitnessBrowser__Koxy:BWI76_RS17735
MRVVILGSGVVGVASAWYLSQAGHEVTVIDRQPGPAEETSAANAGQISPGYAAPWAAPGV
PLKAIKWMFQRHAPLAIGLDGTPFQLKWMWQMLRNCDTRHYMENKGRMVRLAEYSRDCLK
ALRESTGIQYEGRQGGTLQLFRTDKQFENATRDIAVLQEAGVPYQLLEANRLLEVEPALA
EVSHKLTGGLRLPNDETGDCQLFTTRLARMAEQAGVTFRFNTPVDELLYEGDLISGVKCG
AEIIKADAYVMAFGSYSTAMLKGLVDIPVYPLKGYSLTIPIAEEDGAPVSTILDETYKIA
ITRFDRRIRVGGMAEIVGFNKELLQPRRETLEMVVRDLFPRGGHVEQATFWTGLRPMTPD
GTPVVGRTAYKNLWLNTGHGTLGWTMACGSGQLISDLISGRTPAIPYDDLAVARYGRGFT
PARAQHLHGVHN
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory