Comparing BWI76_RS18295 FitnessBrowser__Koxy:BWI76_RS18295 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
Q02DS7 Tryptophan-specific transport protein; Tryptophan permease from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
35% identity, 94% coverage: 6:385/403 of query aligns to 16:399/417 of Q02DS7
Sites not aligning to the query:
>BWI76_RS18295 FitnessBrowser__Koxy:BWI76_RS18295
MKNRTLGSILIVAGTTIGAGMLAMPLASAGVGFGVTLGLLITLWALMCYTALLLLEVYQH
VPADMGLGSLAARYLGRYGQWATGFCMLFLLYALTAAYISGAGELLASSLNQWLDWRLPP
AAGVLIFTGIGGTVVCIGTSLVDLFNRFLFSAKIIFLAIMLALLLPHIHQINLLTLPLQQ
GLALSAIPVIFTSFGFHGSIPSIVSYLGGDIRKLRRVFVIGSFIPLVAYIFWQLATLGSI
DSPVFTALLAKNAGLNGLLEAIREVVASAHVELAVHLFADLALATSFLGVALGLFDYLAD
LFQRQNSAAGRLQSGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALMLPSLLVMKSR
QQHPDAAWRVAGGSPALWLVLLCGIGIVAIQFAIVAGLLPAVG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory