SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS22290 FitnessBrowser__Koxy:BWI76_RS22290 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

P09323 PTS system N-acetylglucosamine-specific EIICBA component; EIICBA-Nag; EII-Nag; EC 2.7.1.193 from Escherichia coli (strain K12) (see paper)
43% identity, 16% coverage: 8:83/480 of query aligns to 392:470/648 of P09323

query
sites
P09323
L
 
L
A
 
A
Q
 
T
Q
 
N
V
 
Y
V
 
I
A
 
A
A
 
A
I
 
V
G
 
G
G
 
G
A
 
T
D
 
D
N
 
N
V
 
L
A
 
K
A
 
A
V
 
I
T
 
D
H
 
A
C
 
C
M
 
I
T
 
T
R
 
R
L
 
L
R
 
R
F
 
L
V
 
T
V
 
V
K
 
A
D
 
D
N
 
S
E
 
A
R
 
R
V
 
V
D
 
N
S
 
D
A
 
T
T
 
M
L
 
C
K
 
K
G
 
R
L
 
L
K
 
-
G
 
G
V
 
A
L
 
S
G
 
G
V
 
V
V
 
V
R
 
K
S
 
L
D
 
N
N
 
K
Q
 
Q
C
 
T
-
 
I
Q
 
Q
V
 
V
I
 
I
I
 
V
G
 
G
-
 
A
-
 
K
-
 
A
N
 
E
T
 
S
V
 
I
S
 
G
Q
 
D
A
 
A
Y
 
M
R
 
K
E
 
K
V
 
V
V
 
V
A
 
A
L
 
R
L
 
G
P
 
P

Sites not aligning to the query:

P69786 PTS system glucose-specific EIICB component; EIICB-Glc; EII-Glc; EC 2.7.1.199 from Escherichia coli (strain K12) (see 5 papers)
38% identity, 15% coverage: 6:78/480 of query aligns to 399:470/477 of P69786

query
sites
P69786
A
 
S
A
 
E
L
 
M
A
 
A
Q
 
P
Q
 
A
V
 
L
V
 
V
A
 
A
A
 
A
I
 
F
G
 
G
G
 
G
A
 
K
D
 
E
N
 
N
V
 
I
A
 
T
A
 
N
V
 
L
T
x
D
H
 
A
C
|
C
M
x
I
T
|
T
R
|
R
L
 
L
R
|
R
F
 
V
V
 
S
V
 
V
K
 
A
D
 
D
N
 
V
E
 
S
R
 
K
V
 
V
D
 
D
S
 
Q
A
 
A
T
 
G
L
 
L
K
 
K
G
 
K
L
 
L
K
 
-
G
 
G
V
 
A
L
 
A
G
 
G
V
 
V
V
|
V
R
 
V
S
x
A
D
 
G
N
 
S
Q
 
G
C
 
V
Q
|
Q
V
 
A
I
|
I
I
 
F
G
 
G
N
 
T
T
 
K
V
 
S
S
 
D
Q
 
N
A
 
L
Y
 
K
R
 
T
E
 
E
V
 
M

Sites not aligning to the query:

1o2fB Complex of enzyme iiaglc and iibglc phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure (see paper)
44% identity, 13% coverage: 8:68/480 of query aligns to 2:61/77 of 1o2fB

query
sites
1o2fB
L
 
M
A
 
A
Q
 
A
Q
 
A
V
 
L
V
 
V
A
 
A
A
 
A
I
 
F
G
 
G
G
 
G
A
 
K
D
 
E
N
 
N
V
 
I
A
 
T
A
 
N
V
 
L
T
 
D
H
 
A
C
|
C
M
x
I
T
|
T
R
 
R
L
 
L
R
 
R
F
 
V
V
 
S
V
 
V
K
 
A
D
 
D
N
 
V
E
 
S
R
 
K
V
 
V
D
 
D
S
 
Q
A
 
A
T
 
G
L
 
L
K
 
K
G
 
K
L
 
L
K
 
-
G
 
G
V
 
A
L
 
A
G
 
G
V
 
V
V
 
V
R
 
V
S
 
A
D
 
G
N
 
S
Q
 
G
C
 
V
Q
 
Q
V
 
A
I
 
I
I
 
F
G
 
G

Query Sequence

>BWI76_RS22290 FitnessBrowser__Koxy:BWI76_RS22290
MSKNYAALAQQVVAAIGGADNVAAVTHCMTRLRFVVKDNERVDSATLKGLKGVLGVVRSD
NQCQVIIGNTVSQAYREVVALLPGDLRPVEPQGKPPITLKRIGAGILDALIGTMSPLIPA
IIGGSMVKLLAMILEMTGALPKGAPTLTILTVIGDGAFFFLPLMVAASAAVKFKTNMSLA
IAIAGVLVHPSFIELMAKAAQGEHVEFAFIPVTAVKYTYTVIPALVMTWCLSYIERWVDR
ITPAVTKNFLKPMLIVLIAAPLSILLIGPLGIWIGSAISALVYTIHSYLGWLSVAIMGAL
WPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQT
ALAAAASAILAGISEPALYGVAVRLKRPLIASLISGFICGAVAGIAGLASHSMAAPGLFT
SVQFFDPANPMTIVWVFGVMALAVVLSFVLTLMLGFEDIPVEEAAADARQRQAGAQASHA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory